RNA id: TCONS_00039007


Basic Information

Item Value
RNA id TCONS_00039007
length 462
RNA type mRNA
GC content 0.52
exon number 4
gene id XLOC_019823
representative False

Chromosome Information

Item Value
chromosome id NC_007132.7
NCBI id CM002905.2
chromosome length 45934066
location 41016729 ~ 41070182 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

tcgTTTCTTGGAATAATTCTGAGCGCAAATGCCTCCTGTTGGGATGTTGGAGTTGCTGGAAGTGAGAAGATGGAATGTCCTGTGCTGACTCAACCTGGCCTTGGTGAAACCACGACCACAGTGACCACCGTCACTCAGACAGGAGGAGACTGGAGCACAGGACTGTTTGATGTGTGCGGTGATGCCAGCACATTGCTGATGGGTACGTTTGTACCCTGTTGTTTGGATCTGAGTCTGGCTCATCAGTATGGAGAATGCATGTGTCTGCCTCTGCTGCCCGGCTCTACCTTTGCCATGAGGGTGGGCATCAGAGAGCGCTTTAAGATCCGGGGCAATGTGTGTGAGGACTGGATGACGGTGTATTGCTGTTACCCTCTGGCCCTCTGTCAAATGATCAGAGAGATGAAGAGGAGGCTGAAGACACAGATCTACACAGTGTCTACTGCACTGGAAAGCTCCTGA

Function

GO: NA

KEGG: NA

ZFIN:

id description
ZDB-GENE-091204-165 Is expressed in blood cell and vascular endothelium. Orthologous to human PLAC8L1 (PLAC8 like 1).

Ensembl:

ensembl_id ENSDART00000190531

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00039690 lncRNA downstream 486643 40528787 ~ 40532423 (-) False XLOC_019814
TCONS_00038988 lncRNA downstream 634965 40377506 ~ 40384101 (-) True XLOC_019812
TCONS_00039689 lncRNA downstream 769041 40249111 ~ 40250025 (-) False XLOC_019809
TCONS_00039261 lncRNA downstream 769041 40249111 ~ 40250025 (-) True XLOC_019809
TCONS_00038977 lncRNA downstream 844419 40167067 ~ 40174647 (-) False XLOC_019808
TCONS_00039262 lncRNA upstream 562205 41590870 ~ 41593163 (-) True XLOC_019831
TCONS_00039036 lncRNA upstream 1015309 42043974 ~ 42048805 (-) True XLOC_019838
TCONS_00039691 lncRNA upstream 1121695 42150360 ~ 42153664 (-) False XLOC_019840
TCONS_00039692 lncRNA upstream 1121695 42150360 ~ 42156182 (-) False XLOC_019840
TCONS_00039693 lncRNA upstream 1121695 42150360 ~ 42156184 (-) False XLOC_019840
TCONS_00039005 mRNA downstream 80684 40930177 ~ 40938382 (-) True XLOC_019822
TCONS_00039003 mRNA downstream 138713 40839857 ~ 40880353 (-) False XLOC_019821
TCONS_00039004 mRNA downstream 138749 40871201 ~ 40880317 (-) True XLOC_019821
TCONS_00039001 mRNA downstream 183997 40805336 ~ 40835069 (-) False XLOC_019820
TCONS_00039010 mRNA upstream 4 41028669 ~ 41065369 (-) True XLOC_019823
TCONS_00039011 mRNA upstream 116249 41144914 ~ 41147818 (-) True XLOC_019824
TCONS_00039013 mRNA upstream 228106 41256771 ~ 41305748 (-) True XLOC_019826
TCONS_00039014 mRNA upstream 281886 41310551 ~ 41369370 (-) False XLOC_019827
TCONS_00039015 mRNA upstream 285365 41314030 ~ 41369539 (-) True XLOC_019827
TCONS_00038990 other downstream 607419 40403260 ~ 40411647 (-) True XLOC_019813
TCONS_00038972 other downstream 937137 40077951 ~ 40081929 (-) True XLOC_019807
TCONS_00038955 other downstream 1751760 39267225 ~ 39267306 (-) True XLOC_019791
TCONS_00038943 other downstream 2289048 38727099 ~ 38730018 (-) False XLOC_019784
TCONS_00038929 other downstream 2955752 38063197 ~ 38063314 (-) True XLOC_019777
TCONS_00039012 other upstream 222766 41251431 ~ 41251548 (-) True XLOC_019825
TCONS_00039016 other upstream 322880 41351545 ~ 41351665 (-) True XLOC_019828
TCONS_00039031 other upstream 834989 41863654 ~ 41873097 (-) True XLOC_019836
TCONS_00039061 other upstream 2361736 43390401 ~ 43393079 (-) True XLOC_019853
TCONS_00039085 other upstream 2726312 43754977 ~ 43801511 (-) True XLOC_019865

Expression Profile

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