RNA id: TCONS_00039014


Basic Information

Item Value
RNA id TCONS_00039014
length 6147
RNA type mRNA
GC content 0.44
exon number 11
gene id XLOC_019827
representative False

Chromosome Information

Item Value
chromosome id NC_007132.7
NCBI id CM002905.2
chromosome length 45934066
location 41310551 ~ 41369539 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATTTGGCTTCAGTAGATTGTGCCGTGAAGAGGAGAAGAAGGACAGCAACGGCAGCGCAGCGAAGGGAGCAGCAGTGCGCTGGTGAAAAAAAAGACAGCgaaaggaaaaaaataacaatgaaaagGACGCACGAACGCTTTGCAGTTCACCAGTAACTAAACTAGTCTTTTTAAATTGAAGTCAATGACGTAGAATCGTCTACGCAAGTGCTTTAAAGGTTAGCAGCTGGCTAAAGCGAGACAGGGCTGTGTCATTGAGAAGGCAGGACACGTCAAGACGAGGAAGGGAGAAAAAATTAGACACTGCTGTCGGATTAAAGATCCCCACTCCATAATATCAGATCACCAGTCTATTCGAGCTTCTGCGTTAGTTTGCGTGGTGGTAATATCTGGAACGAGTGTCTGCCCTCAGTCATCGCTCGGATCAGCTACTAAGGGCATAGGAAGCAAGAATAACTGTTGGGACCAAGTTAAACTGGAGAACATAAATGGGGGATTACGGGTTTGGAGTCTTAGTGCAGAACAACACTGGCAACAAGTCTGCTTTCCCAGTTCGAATCCACCCTCACCTGCAACCGCCACATCACCACCCCAATGCAACCGCCAGCCCCGCCGCTTTCATAAACAGCACCCCGGCTGGGAATGGCAGCAGCAGCGCTTCGACCTGGCTGTTCCCGGCAGCTGGAGGCCACAACAACATGCAAGATGAAATTTTGGGCTCGGATAAACCCAAAGTACAGCAGCAGGAGCTGCAGGAGACCCAAGacaaacagcagcagcagcagctctcgCCTGGACATCAGGAGAGCACCATCATCTCTGAACTGGAAAAGGCTCGTGCCGAAGAAGGTAAGGTGGAGAGTGGGTCGTCTGAAGGGACCAATGGCAAAGAGAAGCTGCGTTTGGAGTCGCCAGTGCTGACAGCCTTTGACTATCAGGAGCCCTCGGGACTGGGCACAGCAGCCCAGTCCAGCACCTCCTCCTCCCTGACCAGCTTCAACAACTGGTCGGCTGCTATTCCCGCCACCCCCTCCACCATTATCAACGAGGACATCAGCTTCTTCAACCCGGCCGCCTCGGCCAACAACGGCCCTCTTCTGTTCCAGAACTTCTCCCATCACGTCAGCCCAGGCTTCGGTGGCAACTTCTCCCCTCAGATTGGTCCCATCTCCCAGCACCACCCACCCCACCCCCACTTCCAGCACCCTCACAGTCAGCACCAGCAGCATCGTCGTTCTCCTGCCAGTCCTCATCCACCACCGTTCCCCCACCGCAGCGCCCCCTTTGGCCAGCTGCCGCATCTCTCCAACAACCTGAGCAAGCCTCCCTCACCATGGGGCAGCTACCAGAGCCCCTCGCCCTCTCCTTCTTCAACATCCTGGAGCCCAGGTGGGGGTTATGGTGGTTGGGGCGGCTCTCAGGGCCGCGAGTACCGCCGAGGCTTGAACGGGGGCATGACACCACTCAACTCCATCTCTCCACTCAAGAAGACCTTTCCAAACAACCACATGCCCCAGCAGAAATACTCCCGCGCCAGTCCCGGCTTTAATCCTAAATCCTGGATGGATGACAGGAGCGAGAACATCTTCCCATTCCAGGATCGTCCCCGCTCATTCGATGGCTTCAACATGCATTCTCTGGAGAACTCTCTGATTGACATCATGAGGGCTGAGCAAGACACTCTGAAAGGTCGCCTCGGATTCACCCATCCAGGAGGAGACAGCCCCTTGCCCATAAATGCAAGGAATTATGGGAGGCGACGAGGACACTCTTCTCTGTTCCCGATGGAAGATGGCTTCCCGGATGAAGAGCGGGCCGATCAGAGCCTGCCAGGCCTCAGTTCCCCTCACTGCTTCCCACACCAGAATGGAGAGCGGGTGGAGCGCTACTCTCGCAAAGTCTTTGTGGGTGGCCTTCCTCCTGACATCGATGAAGATGAGATAACTGCTAGTTTTCGCCGCTTTGGACACCTGTTTGTGGATTGGCCTCACAAAGCAGAGAGCAAGTCATACTTCCCCCCGAAAGGCTACGCTTTCCTCTTGTTTCAAGATGAGAGCTCCGTTCAAGCCCTTATCGATGCCTGTATTGAAGAGGACGGAAAACTCTACTTGTGTGTTTCCAGCCCCACCATCAAAGACAAACCTGTCCAAATTCGCCCATGGAATCTTAACGATAGTGACTTTGTGATGGATGGATCACAGCCGCTGGACCCCAGGAAGACCATATTTGTGGGTGGAGTGCCACGTCCACTGCGTGCAGTGGAGCTGGCGATGATCATGGACAGGCTGTATGGCGGTGTGTGCTACGCAGGCATCGACACAGACCCAGAGCTGAAGTACCCCAAGGGCGCAGGGCGGGTCGCCTTCTCTAATCAGCAGAGCTACATTGCTGCTATCAGTGCTCGTTTTGTACAACTGCAGCATGGAGAAATCGATAAACGGGTGGAAGTGAAGCCATACGTCCTGGATGACCAGCTGTGTGATGAATGTCAGGGGACTCGCTGCGGAGGCAAGTTTGCTCCTTTCTTCTGCGCTAACGTGACCTGTCTCCAGTATTACTGTGAATATTGCTGGGCGGCGATCCACTCGCGCGCCGGCCGGGAGTTCCACAAGCCCCTGGTGAAGGAAGGCGGCGACAGACCTCGTCACATCTCCTTCCGCTGGAACTAAAGCCGGCGGGACGGGAGGAGAAGAGCGGGAACGAGCAGGAGACGGGAGGAGCGTAGCCTAGGAGGAGTCGCAAAATCATCATCTAAATAAATGCACTTTTCTGTTGCTGGTtcctttttagtttaatttaagaagaagaaaaaaaagacaaacgacaaaaaaatggattttaatttgtcatttaatatatatgaaaaaaaagaagattcaggaagaaaaagaaaatgtctAATCCATCTctctatttttttataactccattctatttaatttttaagtGCACAGAGATGTGAATATATTGAGTATTAGTATAATTTGTCAGTAGGTATCTGCATGACTTTAGAATTGGCTTTGTTTTCGTTTAACCTTGCGATTTGGGAAGTATTACGTCCTATTTTAATTTAACGGAAAAGGCGAAGGAGCAAACGCGAATAGAGAGAAAAGGTGCGGGAAGAGTGCACTTATTTCTTTACAGATGTGTGGTTTAAGATCTCAGTTGTTAACCAAAGCTTGGGATTTAACGAAAACAGATGAAGCGAATTCTCTCGACGCTCTGTTTTTATTTCGTGCGTGTGTATACTTTAAGACCATGCTAATCTTTAATGTTGACAACAACTGATTCCACAACAGCTGTCTGGATTTGATCTCCATGCAAGAAAACTAATACCTCAAGCTTAGCTGCTAGTTTAAGtcgaatatatatttaaaaacgacaaaaaaaaaaatcaagctggtCTAACCCGTTCCCCTCAGGACGGCAGAAAAAAAAGGAAGTGACATCAGCAAACAGCACATTGAGAAAACCTGCTCTGTCGCTTCCTGATTAGAATTGGAGATTCAGCATCCTCGTGGGGAATGTACGTTGGTAAAGTTGCAGTAGTCTGCCTGCAAAGCTGGTTCGAACGCGAGGAACTTGATTTCGTTTCTGGTCCTGCTTAGCGTCCGCGTTCTTTCAGGCTGTTAGCGGCAAGCCTtcgttttttaattttgttttgttttagcaaTATGTCTCGCCTTTCCCCAGAAGCCCCCCTCAAAAAGAGGTGTACGTACGAGCAGAACAGCTACTTGAAAGGGAGGAAGACAATGAAGCTCCTGTACTGCAGCCGCAGTGTTGAAGTGTGAAGCATAACTGAAGGTAGTCCATGCATCTCTCCTCCCCCCAACACTCACTTTCAGACATTAGGGAACCAAAGATGGCTGTTTTGGTAGCTAGTAAAACCATGGACGTTTGCAGATTTAATTTTGCCCCCCCTTCGCCCAACCCCCAGTCCATCCCATTCGATATATAAAGACCAGACGGGCTCCAGCAAACCAAAGATTGGCCTTGAATCCATCAGTCCTAGTAACACTAGTGAAAACCCTCAAACGAAGAACACGCGCATAATTCGTCAGGTAACGGCCAATTCTCGGAAAACCGATTAGCGCTAACGTCAGGGAGTCAGTGATCAGTTGATACACTAGTGAGAAACTGCGTCACTCGAGCTGGTGGTGGTCGAACGTTTTCAAAGCGAAACACTTTTTGAAGAATTTGCTGTTAACGCGAAacgaaaaacgaaaaaaaaaaaagattattttataCATGGCCTGCTGATTTTTTGGTACAGTGTTTTCTAGCTAAATTATTTTGTCATGcacatataaacatttattatgcaCTACTTTtctaaatacgttttttttttcgaCAGTCATTTTAGGCACATTTTTCAcgaaacggaaaaaaaaaactcctttttGCAATACCTCAATTTTTCACATTGTGAAAGGTAGCTTTTGTACTTTTGTTACTGAGAGATCTGCATATATGGAAACTTTCATTTGAAGAGAAAAGTGAATTTAATATATCTTATTTTCAATTATGCTTTTTATACATTTCAGTGCTGAGGAATCTTTACAGCTAAAGCAGCACGCACTTGTGTTGACGCGACAAATCTGCAGAGGAGAGAGAGCGCTCTTGTACACTAGATTTCAATTGGGAAAAAAATGATCTGACAGCAGCATGGTAAGAACAACGTTGTCGTTCATGTTAAGCAAAAGCTCGTCTTTTTGGTTTCCTCTCTCCATAGCTGGAACTTAAACTATAATATAAGGAGAATGCTAAATCCGGTCAGTTCACGAGAATGGATGTTTGATGTTTAGATATTTTaacatttgaaaataaacatatatacatatatatatattcttgaacTGCCAACTAGTTCCTATTGTAACCCTTAGCATGCATGATGAGAagagaaaataagaaaaaaaaaaacgtacatgaATTAGCTCTTGAAATTAATCGTTGTGGTTGTGCACCAGATGTTTCTAAAGCTTTGATTTGAGGCCACCCCCACTACCTTGTTATTATTCTCTATGCCTTTCCCCGTAATCCAGTATCGATAGGATGCACAGAGGAaaaatacagatatatatatatatagatatacataaGAAAACAACTATTTGCAGTGCAGGACGAACGCATCTTCTTTAGTACGCTGTGTCGAAAAGACTTGAGAACTTCATCCCCACTGTCTGTTTGAAGTAAATCCAAACCCGTTTGGAGGAAGGGGAACTTAAGACTTGAATGTGGTAAATATGTTGCAAGTTAACGTCGAGTTGTTATGTGCAATACtttttttgaactttttttccagataaaaaaaagaaaaaacaagactcTTTGCAATGTAATTCTTTAATGCCATTTTTAATTGCCGACATTTAAAGAAGATGTTAATATGTTTTTCACAGTCATTTTCTACTGTTATTGTAATCCTTTTCATGCTGGTGTTTGTAAAAAAGAAACGGATAAAAAAAAACCCCGAAATCAACCTATTTGTACTAATATAAATGATCgaagttatttttaaaacattaaaggttTTGTGCTCATTTTGCTTATTTTGTTTCTTTGGAGCTACTGTGATTGATCGCATTGTAATTATTAGGTCAACGATGTATCTAGCTGTTTATCGGTCTATTTTTAATTGGAatgtataattaatttttataattttgatcagatttttgttatatttttgagGTGAAGCTTTTAATATGTTAAAGTGTCTAGTTTTTACTAATTGCTATATTGTGCTCCACAATATATGGTTCACATTttctgaaggaaaataaatatttaaatatctgtCTGTTAACGATGTTACTTAATGGCGAAAATTTCAATAGTTTTTAACTGTGTATGGGAAGGTTGTCGTATTTATTAATAGCATTTTTTTACTTAAGATATCACCttaatttttattgtcatttcactTTATAAGTTCctatttttgtattttgctttCTAATTAAGTTATGTTATACGAAATGTTCATATTCTAGGAGTTGGTCTGTAAGTGCTAGTGAAACGAAAAGAAAAATctaatgttatttaattgtttgcagCCAACTATTTATAACAATatgcataatttttaaatatttgtaatgtgAAATGTTGAATGAATAAAACTTAACTGTGACAA

Function

GO:

id name namespace
GO:0006417 regulation of translation biological_process
GO:0045182 translation regulator activity molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0003723 RNA binding molecular_function
GO:0003730 mRNA 3'-UTR binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-170601-167 Predicted to enable mRNA 3'-UTR binding activity and translation regulator activity. Predicted to act upstream of or within regulation of translation. Orthologous to human CPEB4 (cytoplasmic polyadenylation element binding protein 4).

Ensembl:

ensembl_id ENSDART00000159290

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00039008 lncRNA downstream 285613 41021833 ~ 41024938 (-) False XLOC_019823
TCONS_00039690 lncRNA downstream 778128 40528787 ~ 40532423 (-) False XLOC_019814
TCONS_00038988 lncRNA downstream 926450 40377506 ~ 40384101 (-) True XLOC_019812
TCONS_00039689 lncRNA downstream 1060526 40249111 ~ 40250025 (-) False XLOC_019809
TCONS_00039262 lncRNA upstream 221500 41590870 ~ 41593163 (-) True XLOC_019831
TCONS_00039036 lncRNA upstream 674604 42043974 ~ 42048805 (-) True XLOC_019838
TCONS_00039691 lncRNA upstream 780990 42150360 ~ 42153664 (-) False XLOC_019840
TCONS_00039692 lncRNA upstream 780990 42150360 ~ 42156182 (-) False XLOC_019840
TCONS_00039693 lncRNA upstream 780990 42150360 ~ 42156184 (-) False XLOC_019840
TCONS_00039013 mRNA downstream 4803 41256771 ~ 41305748 (-) True XLOC_019826
TCONS_00039011 mRNA downstream 162733 41144914 ~ 41147818 (-) True XLOC_019824
TCONS_00039009 mRNA downstream 240369 41026612 ~ 41070182 (-) False XLOC_019823
TCONS_00039010 mRNA downstream 245182 41028669 ~ 41065369 (-) True XLOC_019823
TCONS_00039007 mRNA downstream 281886 41019066 ~ 41028665 (-) False XLOC_019823
TCONS_00039017 mRNA upstream 166584 41535954 ~ 41545995 (-) True XLOC_019829
TCONS_00039018 mRNA upstream 188512 41557882 ~ 41588129 (-) True XLOC_019830
TCONS_00039019 mRNA upstream 228599 41597969 ~ 41620419 (-) False XLOC_019832
TCONS_00039020 mRNA upstream 245038 41614408 ~ 41617372 (-) True XLOC_019833
TCONS_00039021 mRNA upstream 247263 41616633 ~ 41624697 (-) False XLOC_019832
TCONS_00039012 other downstream 59003 41251431 ~ 41251548 (-) True XLOC_019825
TCONS_00038990 other downstream 898904 40403260 ~ 40411647 (-) True XLOC_019813
TCONS_00038972 other downstream 1228622 40077951 ~ 40081929 (-) True XLOC_019807
TCONS_00038955 other downstream 2043245 39267225 ~ 39267306 (-) True XLOC_019791
TCONS_00038943 other downstream 2580533 38727099 ~ 38730018 (-) False XLOC_019784
TCONS_00039031 other upstream 494284 41863654 ~ 41873097 (-) True XLOC_019836
TCONS_00039061 other upstream 2021031 43390401 ~ 43393079 (-) True XLOC_019853
TCONS_00039085 other upstream 2385607 43754977 ~ 43801511 (-) True XLOC_019865
TCONS_00039098 other upstream 3198810 44568180 ~ 44568266 (-) True XLOC_019876
TCONS_00039112 other upstream 3827972 45197342 ~ 45209405 (-) False XLOC_019883

Expression Profile

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