RNA id: XM_036936597.1


Basic Information

Item Value
RNA id XM_036936597.1
length 5268
RNA type mRNA
GC content 0.55
exon number 28
gene id dapk1
representative False

Chromosome Information

Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 85452185 ~ 85658741 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AGGACACTACTACATGTAGTGGAACACGCAGCCCACACACCATTATTAGCCAGCTACATTGTTACAATCCTTCCTTCCATTTCCTGCAACATTCCGTTTTTATGTTTTCTGAAAGGAAACGTTACTTCGTTTCAGCGTCTCGGATAATATATTAGCCTGTCTTCTATATTGACTGCTGGGACACGACCTGCTTCGTGGAAAACTAGAGAGCGAAAAGCGAGACCAGCGAGTGAAAGTCGTGACGTCTCACAAAGCAAGAATTAAAGGAGCAGATATGAAGAGGGTCCGTGGCCAGGTACGGCTGGGTCGGTTCACCGGGACACGGACGGGAGGCTGCTGAAAGAAGGCTGCGGTGATGTGCATGCTGCTGTTTCGGAATCCTCGGCTTGGGAGCAAGAACCGCCTGACAACATGACTGGGTTCAACCAGCAGAATGTTGAGGAATACTATGAGATGGGAGATGAGCTGGGGAGTGGTCAGTTTGCGGTGGTAAAGAAATGTCGTGAACTTAGCTCTGGCCTGGAGTATGCCGCTAAGTTCATCCGTAAGCGACGGAGCAAGTCGAGCCGGCGTGGCGTGACCCGGGAAGACATCGAGAGGGAGGTCAGCATTCTGAAGGAGATTGAACACCCTAACACCATCACGCTACACGACGTGTTCGAGAACAAGACTGATGTCATCCTCATACTAGAACTggtGGCTGGTGGAGAACTGTTTAATTTGCTAGCAGAGAAGGAGTCCCTAACAGAAGAGGAGGCTACTGAGTTCCTCAAACAGATTCTGGACGGAGTCCACTACCTACACTCCAAACACATTGCACACTTTGACCTCAAGccaGAGAACATTATGTTACTGAACAGAGCTGTGGCCCATCCTCGCATCAAGCTCATCGACTTCGGTCTGGCACACAAGATCGATTTTGGCAATGATTTCAAAAACATCTTTGGCACCCCGGAATTTGTAGCTCCAGAGGTAGTCAACTATGAACCGCTCGGCCTGGAGGCAGACATGTGGAGTGTCGGAGTGATCACCTATATTCTgTTGAGTGGTGCATCGCCGTTCTTGGGGGAGAATAAGCAGGAGACTTTAGCTAACGTGTCGGCGGTGGACTACACCTTCGATGAAGAGTTCTTTAGCAGCACCAGCCTCCTGGCCAAAGACTTTATCACCCGGCTGCTTATCAAAGACCCAAAAAAGAGAATGACCATCCAGGATAGTCTGCTCCATCCCTGGATCAAGCCAAAGGACTCCCAGCAGGCTCTCAGCAGGAAGGAGTCTGCAGTCAACATGGAGAAGTTTAAGAAGTTTGCTGCTCGGAGGAAATGGAAGCAATCGGTGCGCCTCATCTCGTTGTGTaaccgtctctctcgctccttcctgTCTAGAAGCAACATCAGTGTGGCTCGCAGTGATGACACGCTGGATGAGGAAGACTCCTTTGTGATGAAGGCTATAATCCATGCAATAAACGACAACAACGTACCTGGCCTGCAGCACCTTCTGACCTCACTGACCAGCTATGACCTTAACCAGCCCAACAAGaacGGGACTCCCCCCCTCCTGATTGCAGCAGGCTGTGGAAACATTCAGATAATCGATGTGCTGATGGGGAAAGGAGCTGAGATACAGGCCCACGACAAGAGTGGAGCGAACGCCATCTACTACGCAGGGAGACACGGACACGTGGAGACCCTCAGGTTCCTGCATGAAAAGACCTGCCCTCTGGACGTCCAAGATAAGAGTGGAGAGACAGCCCTACACGTGGCAGCTCGCTATGGCAACGTGGATGTGGTCCAATACCTGTGTAGTATCCATGCCAACCCAGACCTCTCAGACAGGgAGCAGGAGACACCGCTCCACTGTGCGTCGTGGCATGGCTACTCCTCGGTGGCCAGGACACTATGCCAGGCGGGGTGCCAGGTTAATGCCAagaacagggagggagagagcccCCTCCTCACCGCCTCTGCCAGGGGGTTCGCTGATATAGTAGAGTGTCTGATAGAACATGGCGCTGACCTCAACTCTACTGACAAGGACAGCCACATAGCGCTCCACCTGGCTGTGAGGAGGTGCCAACTGGAGGTGGTCAGATGTTTGCTCCGTCACCCTTGCCCCGTCGACCATCAGGATCGCCACGGCAACACGCCGCTGCACATCGCCTGTAAGGACGGCAACTTGCCCGTTGTCACGACACTGTGTGCTGCCAAGGCAACCCTCGACCTTCCCAACAAGtatGGCAGGACACCTCTCCACATGGCAGCTATCAACGGTCTTCTAGAGGTAGTCAGACACCTGTGTGTAGCTGGGGCCAATACAGACGTCGTCACCAATgatGGTAAAACAGCAGAAGATTTGGCagtgcaggagcagcaggagcaTGTTGCTGTGTTGCTGGTTAAACTGAAGAAGAACAACCATAAAGGCAGCTACATCCAGGCTCTGCGTCCCACCAGCACCCCCCAGCCTCGGGTCAAGCTGAAGCTGCTGGGCCACTGTGGCTGTGGGAAGAGCTCCCTCCTGGAGAGTCTGAAGTGTGGCATCCTAAGGGGCTTCTTCAGGAGGAGACGACCACGGGGCAACAACACCCCACGACATCCCAACTCACCCATGGATGGCAAGGCTGCAGtgtccGTGAGTATCTCCAACCTGTATCCTGGCTGTGAGAACGTCTGTGTGCGTAGTCGCAGTATGATGTTTGAGCCCAGCCTGACCAAGGGAGTCCTGGAAGTGTTCAGCCCCGTCACCAACGCACTCTCCTCAGCCGACGACCTCGCCACCAGAGCCATCGACATCCAGAACACTAACATCAATGgtgtAGGAGACTTCAGTGTTTGGGAGTTCAGTGGTAACCCTGTGTACTACTGTTCTTACGACTACTTTGCTGCCAACGACCCTACAGCCATCCACCTGGTGCTGTTCAGTCTGGAGGAACCCTACGAGACTCAGCTCAGCCAGGCTACATACTGGCTCAACATGTTGAAGGCCTTAACACTGCCACAGGATACTATAGCGTTTGGAGGTCGCATCCATAGCCCGCTGACGGTAGTCCTTGTGGGGACTCATGCTGACGTGGCTTGCCTGCCTCGGGGGGCTGGAGGGGAGTTTGGATACGACAAGGAGAGGCCTCTACTCAAGGAGCTCCGGAACAGGTTTGGCAATGACCTGCAGATCTCAGAGAGGCTGTTTGTGATGGACGCTGGAGCCTCCACCTCTAAAGATGTCAAACTGCTCCGGAACCACCTGCTGGAACTACGCAATAACATCGTCTCTACCTGTAGTCCCATGTCGGCCCTTTCAGAGTGTctggtctcgaccctgccctccTGGAGGAAAATGAGTGGCCCTAACCAGCTGACGTCATGGCAACAGTTTGTCTCTGACGTCCAGGAACACATCAACCCACTGGTCAGCGAGGAGCACCTCCGAGGGGTCGCACAGCAGCTCCACAGCATgggagagATCAACCTGATGCAGAGTGAGACGGTGCAGGATGTGATGGTGTTGGAGCCCCGCTGGCTGTGTAGTGGGGTGTTAGCCCGCCTCCTCTCTGTGGACACGCCTAAAGCCATCCACCACTACAGGGGGCGCTACAGACTGGAGGAGATACAGGCTCTGGCCCCAGAGAGCGACGTGGACGAACTGCTACAGGTGCTGGATGCCATGGACGTGTGCGTACGTGACCTGACCAACCCTGGCATGGTGGATGTCCCCGCCCTGATCAAGACCAACAGCCTCCACCACTCCTGgacggaggaagaggaggaggacgatgTCCTGATCTACGGAGGGGTCAGACTGGTTCCTGCTGAACACCTCACACCTTTCCCCTGTGGACTGTTCCACAAGCTACAGGTGAACCTGTGTCGCTGGAGCCACCAGCAGCGCCCTGAGGACGACACAGGGGAGGGGCCTGACGGAGACATCCGCCTCTGGACCAATGGGGCAAAGGTGAGCCAAGGCGGAGCGGAGGCCATGATCCTATTGGTCAACCACGGCCAGGGGGTGGAGATCCAGGTCAGAGGTCACGACAGCGAACGGGCCAAGTGTTACACCCTCCTGGACACCATGGTTACCATTACAGAGTCGCTCCTGTCCTCCACCCTCCCTGGCCTCCTCACCGCCCGGTACTACCTCAGCCCCCAGCAGCTCAGAGAGCATCACGGTCCCGTCATGATCTACCAGCCTAAAGACTTCCTGAAGgcccagacccagagagagaccagcctcACCAACACCATGGGTGGTTACAGGGAGAGCTTCAGCAGTATCCTAGCCTTGGGCTGTACTGAAGTCTATAGTCAGGGTAGTCTGTGTGCAGATGTCCACATCTCAGAGGTCAGCCTGCTGGCCAGGAGGAAGCTGTGTCGTCTGTTAGACCCTCCTGATGCGCTGGGGAAGGACTGGTGTCTGCTGGCTATGAACCTGGGTCTCACCTACCTGGTGGCCAAACACAGCTCCACCCCCAACGGCACCCCAACCAATGGGGGCCCTGCCCCAGACAATGACCCCGCCCTCCTGGCCAGCCCCACGGCAGCGCTGCTCCTGGATTGGTCAGTCCGTCCAGACAGCACGGTGGGGTTGTTGATGTGGAAGCTGCGTGAGTTGGGGAGGCGTGACGCGGCTGACTTCCTGTTAAAGACCTCGCCTGTCTTCAGGGTCAACATAGAGGGTGTGgctagggggaggggaagagCCTGTAACGGAGGCACCTCCTACAACTCCATCAGCTCAGTCATCTCCCGATGATGAGACGGGTCTAATCACTGGGAACCAAGCGGAACCAAGCGGGTAGAGAAACACAGGGACAAACCTGAAATGGATTTTCTTTTTCCGTTGAAAAACATTTTGCTTCAGTGTGTGCTATTGAATACACACCATGTCCTGGATCAGAACAGCTTCCGCTCATCCTGATCTGGCCCATCAGGGGAGAAGACtagaatctgatcctagatcagagtcCTGACTGGGGAAACTAACTGTCCTGTCCTCAGAGTGAGGCTGGGCTAACTAGGGCTGACGAACCAACCAACACCATGTGCAATGTAATCTTTCCCGGGGGTTTAGTGTTAGTTCTCTCCTGTTAACCCCTAGGTCACTGATGCTCTGTGAGACTGATGCTCTGTGCACATCCAGTGTCCATAtagctcccctcctctcttctcctactctactcctgtcctctcctcctcctcctgtcctcctctcctcctcctgtcctcctctcctcctcctctcctcctcctctcctcctcctgtcctcctctc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1168909 lncRNA downstream 799 85447782 ~ 85451386 (-) False G1026931
TU1168912 lncRNA downstream 799 85447782 ~ 85451386 (-) True G1026931
TU1168918 lncRNA downstream 6902 85444895 ~ 85445283 (-) True G1026937
TU1168916 lncRNA downstream 15707 85436011 ~ 85436478 (-) True G1026935
TU1168722 lncRNA downstream 22680 85411726 ~ 85429505 (-) False G1026794
TU1169019 lncRNA upstream 54419 85713153 ~ 85713505 (-) True G1027010
TU1169047 lncRNA upstream 87125 85745859 ~ 85746162 (-) True G1027037
TU1169066 lncRNA upstream 95682 85754416 ~ 85754880 (-) True G1027054
TU1169095 lncRNA upstream 175475 85834209 ~ 85834434 (-) True G1027083
TU1169096 lncRNA upstream 177256 85835990 ~ 85836201 (-) True G1027084
XM_036936603.1 mRNA downstream 60183 85248409 ~ 85392002 (-) False kank1a
XM_036936599.1 mRNA downstream 60188 85239609 ~ 85391997 (-) False kank1a
XM_036936602.1 mRNA downstream 60254 85239609 ~ 85391931 (-) False kank1a
XM_036936601.1 mRNA downstream 106514 85239609 ~ 85345671 (-) False kank1a
XM_036936595.1 mRNA downstream 329813 85046114 ~ 85122372 (-) True LOC118937429
XM_036936604.1 mRNA upstream 383008 86041742 ~ 86232638 (-) False tmem8b
TU1168443 other downstream 254685 85187326 ~ 85197500 (-) False G1026586
TU1167230 other downstream 1549146 83873900 ~ 83903039 (-) True ypel1
TU1167229 other downstream 1551709 83873900 ~ 83900476 (-) False ypel1
TU1167110 other downstream 1733577 83716077 ~ 83718608 (-) False G1025498

Expression Profile