RNA id: TU1063882



Basic Information


Item Value
RNA id TU1063882
length 383
lncRNA type intronic
GC content 0.36
exon number 2
gene id G933174
representative True

Chromosome Information


Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 241125 ~ 241638 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


aggcaaaaccataagcaaattggtaaactgggatatgactaaagagttaatcaggggtaaactgggatatgactaaagagttaatcagggtaaactgggatatgactaaagagttaatcagggtaaactgggatatgactaaagagttaatcagggtaaactgggatatgactaaagagttaatcagggtaaactgggatatgactaaagagttcatCAGGGTAatctgggatatgactaaagagttaatcagggtaaactgggatgtgactaaagagttaatcagggtgatttttccacaaatagacaggtattttcctttccacggtagcaagatcttatctatttttgccaactttctaTTAAAATTGAATGTAGtgaga

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU1063870 lncRNA upstream 27919 208120 ~ 213206 (+) True G933162
TU1063842 lncRNA upstream 60121 180127 ~ 181004 (+) True G933145
TU1063814 lncRNA upstream 99370 141341 ~ 141755 (+) True G933117
TU1063807 lncRNA upstream 111323 129199 ~ 129802 (+) True G933110
TU1063796 lncRNA upstream 130942 108856 ~ 110183 (+) True G933100
TU1063894 lncRNA downstream 31236 272874 ~ 273180 (+) True G933185
TU1063915 lncRNA downstream 69260 310898 ~ 311202 (+) False G933202
TU1063916 lncRNA downstream 69260 310898 ~ 311957 (+) False G933202
TU1063917 lncRNA downstream 69260 310898 ~ 311957 (+) True G933202
TU1063942 lncRNA downstream 96660 338298 ~ 338586 (+) True G933222
XM_036934636.1 mRNA upstream 152774 63442 ~ 88351 (+) True gars1
XM_036934640.1 mRNA downstream 99003 340641 ~ 378363 (+) True cry-dash
XM_036934643.1 mRNA downstream 150474 392112 ~ 435459 (+) False slc22a13b
XM_036934642.1 mRNA downstream 150492 392130 ~ 438530 (+) False slc22a13b
XM_021620013.2 mRNA downstream 244054 485692 ~ 542353 (+) False LOC110535152
XM_036936628.1 mRNA downstream 319796 561434 ~ 564576 (+) True LOC118937458
TU1064305 other downstream 244192 485830 ~ 539412 (+) True LOC110535152
TU1064302 other downstream 320015 561653 ~ 562659 (+) False G933532
TU1064300 other downstream 320376 562014 ~ 562659 (+) True G933532
TU1064355 other downstream 354685 596323 ~ 604169 (+) True LOC110536523
TU1064476 other downstream 483549 725187 ~ 728205 (+) True G933679

Expression Profile