RNA id: TU1063894


Basic Information

Item Value
RNA id TU1063894
length 265
lncRNA type intronic
GC content 0.39
exon number 2
gene id G933185
representative True

Chromosome Information

Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 272874 ~ 273180 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gcctgaaatgtggcaaaaggtcgcaaagttcaagggggccgaatactttcgcaaggcactgtatttctacCAAAACAATTATGGGTTCAACATGATCACAACATGTACAATGTGCcacaagtacagtggggcaaaaaagtatttagtcagccaccaattgtgcaagttctaccacttaaaaagatgagagaggcctgtaattttcatcataggtacacttcaactatgacagacaaaatgagaaaaaaaatccagaaaatcacat

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1063882 lncRNA upstream 31236 241125 ~ 241638 (+) True G933174
TU1063870 lncRNA upstream 59668 208120 ~ 213206 (+) True G933162
TU1063842 lncRNA upstream 91870 180127 ~ 181004 (+) True G933145
TU1063814 lncRNA upstream 131119 141341 ~ 141755 (+) True G933117
TU1063807 lncRNA upstream 143072 129199 ~ 129802 (+) True G933110
TU1063915 lncRNA downstream 37718 310898 ~ 311202 (+) False G933202
TU1063916 lncRNA downstream 37718 310898 ~ 311957 (+) False G933202
TU1063917 lncRNA downstream 37718 310898 ~ 311957 (+) True G933202
TU1063942 lncRNA downstream 65118 338298 ~ 338586 (+) True G933222
TU1063946 lncRNA downstream 71448 344628 ~ 344912 (+) True G933225
XM_036934636.1 mRNA upstream 184523 63442 ~ 88351 (+) True gars1
XM_036934640.1 mRNA downstream 67461 340641 ~ 378363 (+) True cry-dash
XM_036934643.1 mRNA downstream 118932 392112 ~ 435459 (+) False slc22a13b
XM_036934642.1 mRNA downstream 118950 392130 ~ 438530 (+) False slc22a13b
XM_021620013.2 mRNA downstream 212512 485692 ~ 542353 (+) False LOC110535152
XM_036936628.1 mRNA downstream 288254 561434 ~ 564576 (+) True LOC118937458
TU1064305 other downstream 212650 485830 ~ 539412 (+) True LOC110535152
TU1064302 other downstream 288473 561653 ~ 562659 (+) False G933532
TU1064300 other downstream 288834 562014 ~ 562659 (+) True G933532
TU1064355 other downstream 323143 596323 ~ 604169 (+) True LOC110536523
TU1064476 other downstream 452007 725187 ~ 728205 (+) True G933679

Expression Profile