RNA id: TU1063946


Basic Information

Item Value
RNA id TU1063946
length 234
lncRNA type intronic
GC content 0.47
exon number 2
gene id G933225
representative True

Chromosome Information

Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 344628 ~ 344912 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

aaactaggccctgtaggatctgccttgttgatagtgttgttaagaaggtagaaaccagggcctgtaggacctgccttgttgatagtgttgttaagaaggtagaaactagggcctgtaggacctgccttgttgatagtgttgttaagaaggtagaaaccagggcctgtaggacctgccttgttgatagtgttgttaagaaggtagaaactagggcctgtaggacctgccttgttg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1063942 lncRNA upstream 6042 338298 ~ 338586 (+) True G933222
TU1063916 lncRNA upstream 32671 310898 ~ 311957 (+) False G933202
TU1063917 lncRNA upstream 32671 310898 ~ 311957 (+) True G933202
TU1063915 lncRNA upstream 33426 310898 ~ 311202 (+) False G933202
TU1063894 lncRNA upstream 71448 272874 ~ 273180 (+) True G933185
TU1063962 lncRNA downstream 36234 381146 ~ 381378 (+) True G933240
TU1063967 lncRNA downstream 44560 389472 ~ 389684 (+) True G933245
TU1063968 lncRNA downstream 45859 390771 ~ 391077 (+) True G933246
TU1063984 lncRNA downstream 58475 403387 ~ 405536 (+) True G933258
TU1063989 lncRNA downstream 62429 407341 ~ 407956 (+) True G933261
XM_036934639.1 mRNA upstream 36788 193431 ~ 307840 (+) True dlec1
XM_036934638.1 mRNA upstream 36789 193352 ~ 307839 (+) False dlec1
XM_036934636.1 mRNA upstream 256277 63442 ~ 88351 (+) True gars1
XM_036934643.1 mRNA downstream 47200 392112 ~ 435459 (+) False slc22a13b
XM_036934642.1 mRNA downstream 47218 392130 ~ 438530 (+) False slc22a13b
XM_021620013.2 mRNA downstream 140780 485692 ~ 542353 (+) False LOC110535152
XM_036936628.1 mRNA downstream 216522 561434 ~ 564576 (+) True LOC118937458
XM_036934647.1 mRNA downstream 230728 575640 ~ 604339 (+) False LOC110536523
TU1064305 other downstream 140918 485830 ~ 539412 (+) True LOC110535152
TU1064302 other downstream 216741 561653 ~ 562659 (+) False G933532
TU1064300 other downstream 217102 562014 ~ 562659 (+) True G933532
TU1064355 other downstream 251411 596323 ~ 604169 (+) True LOC110536523
TU1064476 other downstream 380275 725187 ~ 728205 (+) True G933679

Expression Profile