RNA id: TU1063967


Basic Information

Item Value
RNA id TU1063967
length 213
lncRNA type inter_gene
GC content 0.44
exon number 1
gene id G933245
representative True

Chromosome Information

Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 389472 ~ 389684 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

aaacatctccaatcgaaaatcaaatcaagagtcggctttctattccgcaacaaagcctccttcactcacgccgtcaaacttaccctagtaaaactgactatcctaccgatcctcgacttcggcgatgtcatctacaaaattgcttccaacactctactcagcaaactggatgcagtttatcacagtgccatccgttttgtcactaaagcacct

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1063962 lncRNA upstream 8094 381146 ~ 381378 (+) True G933240
TU1063946 lncRNA upstream 44560 344628 ~ 344912 (+) True G933225
TU1063942 lncRNA upstream 50886 338298 ~ 338586 (+) True G933222
TU1063916 lncRNA upstream 77515 310898 ~ 311957 (+) False G933202
TU1063917 lncRNA upstream 77515 310898 ~ 311957 (+) True G933202
TU1063968 lncRNA downstream 1087 390771 ~ 391077 (+) True G933246
TU1063984 lncRNA downstream 13703 403387 ~ 405536 (+) True G933258
TU1063989 lncRNA downstream 17657 407341 ~ 407956 (+) True G933261
TU1063991 lncRNA downstream 20252 409936 ~ 416487 (+) True G933262
TU1063993 lncRNA downstream 23379 413063 ~ 415404 (+) True G933264
XM_036934640.1 mRNA upstream 11109 340641 ~ 378363 (+) True cry-dash
XM_036934639.1 mRNA upstream 81632 193431 ~ 307840 (+) True dlec1
XM_036934638.1 mRNA upstream 81633 193352 ~ 307839 (+) False dlec1
XM_036934636.1 mRNA upstream 301121 63442 ~ 88351 (+) True gars1
XM_036934643.1 mRNA downstream 2428 392112 ~ 435459 (+) False slc22a13b
XM_036934642.1 mRNA downstream 2446 392130 ~ 438530 (+) False slc22a13b
XM_021620013.2 mRNA downstream 96008 485692 ~ 542353 (+) False LOC110535152
XM_036936628.1 mRNA downstream 171750 561434 ~ 564576 (+) True LOC118937458
XM_036934647.1 mRNA downstream 185956 575640 ~ 604339 (+) False LOC110536523
TU1064305 other downstream 96146 485830 ~ 539412 (+) True LOC110535152
TU1064302 other downstream 171969 561653 ~ 562659 (+) False G933532
TU1064300 other downstream 172330 562014 ~ 562659 (+) True G933532
TU1064355 other downstream 206639 596323 ~ 604169 (+) True LOC110536523
TU1064476 other downstream 335503 725187 ~ 728205 (+) True G933679

Expression Profile