RNA id: TU1063989


Basic Information

Item Value
RNA id TU1063989
length 462
lncRNA type intronic
GC content 0.35
exon number 2
gene id G933261
representative True

Chromosome Information

Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 407341 ~ 407956 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tcactatcatactgacatccagcaggttattatcatcactatcatactaacatccagtttactatcactatcatactaacatccagcaggttattatcactatcatactgacatccaggttatcatcactatcatactaacatccagcagggtattatcactatcatactaacatccaggttatcatcactatcataccaacatccagcaggttattatcatcactatcatactagcatccagcaggttattatcatcCCTATCATACttacatccaggttatcatcactatcctactaacatccagcaggttattatcattgctatcatactaacatccaggttatcatcactatcataccaaaattcagcaggttattatcatcactatcatactaacatccaggttatcatcactatcatactgacaTCCAGCAGGTTATAAACATCAcaatcatacta

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1063984 lncRNA upstream 1805 403387 ~ 405536 (+) True G933258
TU1063968 lncRNA upstream 16264 390771 ~ 391077 (+) True G933246
TU1063967 lncRNA upstream 17657 389472 ~ 389684 (+) True G933245
TU1063962 lncRNA upstream 25963 381146 ~ 381378 (+) True G933240
TU1063946 lncRNA upstream 62429 344628 ~ 344912 (+) True G933225
TU1063991 lncRNA downstream 1980 409936 ~ 416487 (+) True G933262
TU1063993 lncRNA downstream 5107 413063 ~ 415404 (+) True G933264
TU1064003 lncRNA downstream 25040 432996 ~ 433447 (+) True G933274
TU1063971 lncRNA downstream 29030 436986 ~ 438034 (+) True slc22a13b
TU1064017 lncRNA downstream 51394 459350 ~ 459708 (+) True G933287
XM_036934640.1 mRNA upstream 28978 340641 ~ 378363 (+) True cry-dash
XM_036934639.1 mRNA upstream 99501 193431 ~ 307840 (+) True dlec1
XM_036934638.1 mRNA upstream 99502 193352 ~ 307839 (+) False dlec1
XM_036934636.1 mRNA upstream 318990 63442 ~ 88351 (+) True gars1
XM_021620013.2 mRNA downstream 77736 485692 ~ 542353 (+) False LOC110535152
XM_036936628.1 mRNA downstream 153478 561434 ~ 564576 (+) True LOC118937458
XM_036934647.1 mRNA downstream 167684 575640 ~ 604339 (+) False LOC110536523
XM_021620012.2 mRNA downstream 224167 632123 ~ 646961 (+) True LOC110535151
XM_036934648.1 mRNA downstream 334536 742492 ~ 859531 (+) False LOC110535150
TU1064305 other downstream 77874 485830 ~ 539412 (+) True LOC110535152
TU1064302 other downstream 153697 561653 ~ 562659 (+) False G933532
TU1064300 other downstream 154058 562014 ~ 562659 (+) True G933532
TU1064355 other downstream 188367 596323 ~ 604169 (+) True LOC110536523
TU1064476 other downstream 317231 725187 ~ 728205 (+) True G933679

Expression Profile