RNA id: TU1063991


Basic Information

Item Value
RNA id TU1063991
length 264
lncRNA type intronic
GC content 0.36
exon number 3
gene id G933262
representative True

Chromosome Information

Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 409936 ~ 416487 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ctattatactgacatccagcaggttattatcactatcatactaacatccaggttatcatcactatcatactgacaTCCAGGAGGTTactatcactatcatactaacatccaggttatcatcactatcatactaacatccatgAGGTTATTATCACTTTCACACTGACATCCAggaggttatcatcactatcatactaacatccaggttatcatcactatcatactaacatccagcaggttattatcactatcatactaacatcc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1063989 lncRNA upstream 1980 407341 ~ 407956 (+) True G933261
TU1063984 lncRNA upstream 4400 403387 ~ 405536 (+) True G933258
TU1063968 lncRNA upstream 18859 390771 ~ 391077 (+) True G933246
TU1063967 lncRNA upstream 20252 389472 ~ 389684 (+) True G933245
TU1063962 lncRNA upstream 28558 381146 ~ 381378 (+) True G933240
TU1064003 lncRNA downstream 16509 432996 ~ 433447 (+) True G933274
TU1063971 lncRNA downstream 20499 436986 ~ 438034 (+) True slc22a13b
TU1064017 lncRNA downstream 42863 459350 ~ 459708 (+) True G933287
TU1064288 lncRNA downstream 55062 471549 ~ 471782 (+) True G933520
TU1064290 lncRNA downstream 56829 473316 ~ 473542 (+) True G933522
XM_036934640.1 mRNA upstream 31573 340641 ~ 378363 (+) True cry-dash
XM_036934639.1 mRNA upstream 102096 193431 ~ 307840 (+) True dlec1
XM_036934638.1 mRNA upstream 102097 193352 ~ 307839 (+) False dlec1
XM_036934636.1 mRNA upstream 321585 63442 ~ 88351 (+) True gars1
XM_021620013.2 mRNA downstream 69205 485692 ~ 542353 (+) False LOC110535152
XM_036936628.1 mRNA downstream 144947 561434 ~ 564576 (+) True LOC118937458
XM_036934647.1 mRNA downstream 159153 575640 ~ 604339 (+) False LOC110536523
XM_021620012.2 mRNA downstream 215636 632123 ~ 646961 (+) True LOC110535151
XM_036934648.1 mRNA downstream 326005 742492 ~ 859531 (+) False LOC110535150
TU1064305 other downstream 69343 485830 ~ 539412 (+) True LOC110535152
TU1064302 other downstream 145166 561653 ~ 562659 (+) False G933532
TU1064300 other downstream 145527 562014 ~ 562659 (+) True G933532
TU1064355 other downstream 179836 596323 ~ 604169 (+) True LOC110536523
TU1064476 other downstream 308700 725187 ~ 728205 (+) True G933679

Expression Profile