RNA id: TU1064003



Basic Information


Item Value
RNA id TU1064003
length 295
lncRNA type intronic
GC content 0.49
exon number 2
gene id G933274
representative True

Chromosome Information


Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 432996 ~ 433447 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


ccaggtcgatgaagacggctgcacagtgctgtcttttattgatggcggttttgATATCGCTTAGGACCttgggtctagagtgtctccccctttgaagagggggatgaccgcaggaGCTTTCCAATATTTGGGGATCAcagatgatatgaaagagaggatgaacaggctagtaatagtggTTGCAATAATTTCTGCGGataagagagggtccagattgtccagcccagctgatatGTAGGGGTCCGGGTTTTGCAGCTCTTACAGAACATCGGCTGTCTTGATTTCGGTGCAggag

Function


GO: NA

KEGG:

id description

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU1063991 lncRNA upstream 16509 409936 ~ 416487 (+) True G933262
TU1063993 lncRNA upstream 17592 413063 ~ 415404 (+) True G933264
TU1063989 lncRNA upstream 25040 407341 ~ 407956 (+) True G933261
TU1063984 lncRNA upstream 27460 403387 ~ 405536 (+) True G933258
TU1063968 lncRNA upstream 41919 390771 ~ 391077 (+) True G933246
TU1063971 lncRNA downstream 3539 436986 ~ 438034 (+) True slc22a13b
TU1064017 lncRNA downstream 25903 459350 ~ 459708 (+) True G933287
TU1064288 lncRNA downstream 38102 471549 ~ 471782 (+) True G933520
TU1064290 lncRNA downstream 39869 473316 ~ 473542 (+) True G933522
TU1064292 lncRNA downstream 44147 477594 ~ 477935 (+) True G933524
XM_036934640.1 mRNA upstream 54633 340641 ~ 378363 (+) True cry-dash
XM_036934639.1 mRNA upstream 125156 193431 ~ 307840 (+) True dlec1
XM_036934638.1 mRNA upstream 125157 193352 ~ 307839 (+) False dlec1
XM_036934636.1 mRNA upstream 344645 63442 ~ 88351 (+) True gars1
XM_021620013.2 mRNA downstream 52245 485692 ~ 542353 (+) False LOC110535152
XM_036936628.1 mRNA downstream 127987 561434 ~ 564576 (+) True LOC118937458
XM_036934647.1 mRNA downstream 142193 575640 ~ 604339 (+) False LOC110536523
XM_021620012.2 mRNA downstream 198676 632123 ~ 646961 (+) True LOC110535151
XM_036934648.1 mRNA downstream 309045 742492 ~ 859531 (+) False LOC110535150
TU1064305 other downstream 52383 485830 ~ 539412 (+) True LOC110535152
TU1064302 other downstream 128206 561653 ~ 562659 (+) False G933532
TU1064300 other downstream 128567 562014 ~ 562659 (+) True G933532
TU1064355 other downstream 162876 596323 ~ 604169 (+) True LOC110536523
TU1064476 other downstream 291740 725187 ~ 728205 (+) True G933679

Expression Profile