RNA id: TU1064017


Basic Information

Item Value
RNA id TU1064017
length 359
lncRNA type inter_gene
GC content 0.52
exon number 1
gene id G933287
representative True

Chromosome Information

Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 459350 ~ 459708 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GTGTTGGTCCAGGTGTAGAATGTCCAGGTGTTGGTCCAGGTGTTGGTCCAGTTGTAGAATGTCTAGGTGTTGGTCCAGGTGCTGGTCCAGGTGCAGCATGTCCAGGTGTTGGTCCAGGTGTAGCATGTCCAGGTGTTGGTCCAGGTGTAGCATGTCCAGGTGTTGGTCCAGTTGTAGAATGTCCAGGTGTTGGTCCAGGTGTAGAATGTCCAGGTGTTGGTCCAGGTGTAGAATGTCCAGGTGTTGGTCCAGGTGTAGAATGTCCAGGTGTTGGTCCAGTTGTAGAATCTCCAGGTGTTGGTCCAGGTGTAGAATGTCCAGGTGTAGAATGTCCAGGTGTAGCATGTCTAGGTGTAGAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1063971 lncRNA upstream 21316 436986 ~ 438034 (+) True slc22a13b
TU1064003 lncRNA upstream 25903 432996 ~ 433447 (+) True G933274
TU1063991 lncRNA upstream 42863 409936 ~ 416487 (+) True G933262
TU1063993 lncRNA upstream 43946 413063 ~ 415404 (+) True G933264
TU1063989 lncRNA upstream 51394 407341 ~ 407956 (+) True G933261
TU1064288 lncRNA downstream 11841 471549 ~ 471782 (+) True G933520
TU1064290 lncRNA downstream 13608 473316 ~ 473542 (+) True G933522
TU1064292 lncRNA downstream 17886 477594 ~ 477935 (+) True G933524
TU1064318 lncRNA downstream 48341 508049 ~ 511773 (+) True G933545
TU1064325 lncRNA downstream 59188 518896 ~ 523618 (+) True G933552
XM_036934642.1 mRNA upstream 20820 392130 ~ 438530 (+) False slc22a13b
XM_036934643.1 mRNA upstream 23891 392112 ~ 435459 (+) False slc22a13b
XM_036934640.1 mRNA upstream 80987 340641 ~ 378363 (+) True cry-dash
XM_036934639.1 mRNA upstream 151510 193431 ~ 307840 (+) True dlec1
XM_036934638.1 mRNA upstream 151511 193352 ~ 307839 (+) False dlec1
XM_021620013.2 mRNA downstream 25984 485692 ~ 542353 (+) False LOC110535152
XM_036936628.1 mRNA downstream 101726 561434 ~ 564576 (+) True LOC118937458
XM_036934647.1 mRNA downstream 115932 575640 ~ 604339 (+) False LOC110536523
XM_021620012.2 mRNA downstream 172415 632123 ~ 646961 (+) True LOC110535151
XM_036934648.1 mRNA downstream 282784 742492 ~ 859531 (+) False LOC110535150
TU1064305 other downstream 26122 485830 ~ 539412 (+) True LOC110535152
TU1064302 other downstream 101945 561653 ~ 562659 (+) False G933532
TU1064300 other downstream 102306 562014 ~ 562659 (+) True G933532
TU1064355 other downstream 136615 596323 ~ 604169 (+) True LOC110536523
TU1064476 other downstream 265479 725187 ~ 728205 (+) True G933679

Expression Profile