RNA id: TU1064334


Basic Information

Item Value
RNA id TU1064334
length 560
lncRNA type read_through
GC content 0.50
exon number 3
gene id G933560
representative True

Chromosome Information

Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 532308 ~ 578651 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gggatgttctctgtttagtgagtcctccacatcagagacagtagagatgaccagggatgttctctgtttagtgagtcctccagatcagaggcagtagggatgaccaggatgttctctgtttagtgagtcctccagatcagagacagtagggatgaccaggatgttctctgtttagtgagtcctccagatcagaggcagtagggatgaccagggatgttctctgtttagtgagtcctccagatcagagacagtagggacgaccagggatgttctctgtttagtgagtcctccagatcagaggcagtagggatgaccagggatgttctctgtttagtgagtcctctagatcagaggcagtagagatgaccagggatgttctctgtttagtgagtcctcaagaccagaggcagtagggatgaccagggatgttctctgtttagtgagtcctccagatcagtagggatgaccagggatgttctctgtttagtgagtcctccagatcagtagggatgaccagggatgttctctgtttagtgagtcctccagaccagaggcagtag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1064325 lncRNA upstream 8690 518896 ~ 523618 (+) True G933552
TU1064318 lncRNA upstream 20535 508049 ~ 511773 (+) True G933545
TU1064292 lncRNA upstream 54373 477594 ~ 477935 (+) True G933524
TU1064290 lncRNA upstream 58766 473316 ~ 473542 (+) True G933522
TU1064288 lncRNA upstream 60526 471549 ~ 471782 (+) True G933520
TU1064360 lncRNA downstream 2867 581518 ~ 595816 (+) True G933583
TU1064363 lncRNA downstream 5742 584393 ~ 589797 (+) False G933585
TU1064364 lncRNA downstream 10392 589043 ~ 589797 (+) True G933585
TU1064366 lncRNA downstream 26027 604678 ~ 608464 (+) True G933586
TU1064353 lncRNA downstream 31806 610457 ~ 611537 (+) True G933576
XM_036934642.1 mRNA upstream 93778 392130 ~ 438530 (+) False slc22a13b
XM_036934643.1 mRNA upstream 96849 392112 ~ 435459 (+) False slc22a13b
XM_036934640.1 mRNA upstream 153945 340641 ~ 378363 (+) True cry-dash
XM_036934639.1 mRNA upstream 224468 193431 ~ 307840 (+) True dlec1
XM_036934638.1 mRNA upstream 224469 193352 ~ 307839 (+) False dlec1
XM_021620012.2 mRNA downstream 53472 632123 ~ 646961 (+) True LOC110535151
XM_036934648.1 mRNA downstream 163841 742492 ~ 859531 (+) False LOC110535150
XM_036934649.1 mRNA downstream 163841 742492 ~ 859531 (+) False LOC110535150
XM_036934650.1 mRNA downstream 163841 742492 ~ 859531 (+) False LOC110535150
XM_036934651.1 mRNA downstream 250837 829488 ~ 859531 (+) True LOC110535150
TU1064355 other downstream 17672 596323 ~ 604169 (+) True LOC110536523
TU1064476 other downstream 146536 725187 ~ 728205 (+) True G933679
TU1064658 other downstream 370880 949531 ~ 951584 (+) True G933799
TU1065095 other downstream 728876 1307527 ~ 1307759 (+) True G934169
TU1065194 other downstream 909425 1488076 ~ 1496014 (+) False G934256

Expression Profile