RNA id: TU1064303


Basic Information

Item Value
RNA id TU1064303
length 562
lncRNA type sense_over
GC content 0.43
exon number 2
gene id G933533
representative True

Chromosome Information

Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 544579 ~ 567355 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

aaatatcAAGGTTTTGTGGAGAAAAACAAAATGCTATATTATGCAAAAAGCCTGAGGTACATATCCCATCCTACGCTGTTCTACAGCCAGCCTATAGCTAGCCTCCTATTGGagaggggtattcaactcttaccctaccagttccagagcctgctggtttacTGTTCTACGGGATAATTGCACACACCtcatgtcccaggtctaaatcagtccctgatttagaggggaacaatgaaaaaaggCAATGCATCTGGCTTGGAGGTCCTGAGTTGAGTTTGATGGGTGTAGGAGTTATGCATGATGCTCCCATTCATACTGTCTATATGTTTTCTGATTGTTCTATACGTTGAACAGTGAACATGTATTCTTCTGTTATCTGCCTTAATTTGCTGACTTTTATAAATCCACCTGATGGGGTTTTCAATGGGTGGAGATCACCTGATAGGGTTTTATATTGCCACCAACAGGACACCTGATGGGGTTTTATATTACCACCAATAGGACACCTGATGGGGTTTTATATTGCCACCAAGAGGACACCTGATGGGGTTTTATATTGCCC

Function

GO: NA

KEGG:

id description

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1064325 lncRNA upstream 20961 518896 ~ 523618 (+) True G933552
TU1064318 lncRNA upstream 32806 508049 ~ 511773 (+) True G933545
TU1064292 lncRNA upstream 66644 477594 ~ 477935 (+) True G933524
TU1064290 lncRNA upstream 71037 473316 ~ 473542 (+) True G933522
TU1064288 lncRNA upstream 72797 471549 ~ 471782 (+) True G933520
TU1064354 lncRNA downstream 8336 575691 ~ 596004 (+) False LOC110536523
TU1064360 lncRNA downstream 14163 581518 ~ 595816 (+) True G933583
TU1064363 lncRNA downstream 17038 584393 ~ 589797 (+) False G933585
TU1064364 lncRNA downstream 21688 589043 ~ 589797 (+) True G933585
TU1064366 lncRNA downstream 37323 604678 ~ 608464 (+) True G933586
XM_021620013.2 mRNA upstream 2226 485692 ~ 542353 (+) False LOC110535152
XM_036934642.1 mRNA upstream 106049 392130 ~ 438530 (+) False slc22a13b
XM_036934643.1 mRNA upstream 109120 392112 ~ 435459 (+) False slc22a13b
XM_036934640.1 mRNA upstream 166216 340641 ~ 378363 (+) True cry-dash
XM_036934639.1 mRNA upstream 236739 193431 ~ 307840 (+) True dlec1
XM_036934647.1 mRNA downstream 8285 575640 ~ 604339 (+) False LOC110536523
XM_021620012.2 mRNA downstream 64768 632123 ~ 646961 (+) True LOC110535151
XM_036934648.1 mRNA downstream 175137 742492 ~ 859531 (+) False LOC110535150
XM_036934649.1 mRNA downstream 175137 742492 ~ 859531 (+) False LOC110535150
XM_036934650.1 mRNA downstream 175137 742492 ~ 859531 (+) False LOC110535150
TU1064305 other upstream 5167 485830 ~ 539412 (+) True LOC110535152
TU1064355 other downstream 28968 596323 ~ 604169 (+) True LOC110536523
TU1064476 other downstream 157832 725187 ~ 728205 (+) True G933679
TU1064658 other downstream 382176 949531 ~ 951584 (+) True G933799
TU1065095 other downstream 740172 1307527 ~ 1307759 (+) True G934169
TU1065194 other downstream 920721 1488076 ~ 1496014 (+) False G934256

Expression Profile