RNA id: TU1064360


Basic Information

Item Value
RNA id TU1064360
length 457
lncRNA type intronic
GC content 0.44
exon number 3
gene id G933583
representative True

Chromosome Information

Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 581518 ~ 595816 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TTGGGACAGAGGGATTCATTAACACCAGACTGGTGAGTTATGGGGACAGAGGGATTCATTAACACCAGACTGGTGAGTTATTGGGACAGAGGGATTCATTAACACCAGACTGGTGTGTTATGGAGACAGAAGGATTCATTAACACCAGACTGGTGAGTTATGGGGACAGAGGGATTCATTAACACCAGACTGGTGAGTTATGGGGACAGAGGGATTcattaacaccagactggtaagtTATGGAGACAGAGGGATTCATtaggtgtgtgggtactgtcactgtttctttatgaacaggtttGTGGGTACTATCACtgtgtctttatgaacaggtgtgtgggtactatcactgtttctttatgaacaggtgtgtgggtacctgtcactgtgtctttatgaacaggtgtgtgggtactgtcactgtttctttatgaacaggtatgtgggtactgtcact

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1064334 lncRNA upstream 2867 532308 ~ 578651 (+) True G933560
TU1064303 lncRNA upstream 14163 544579 ~ 567355 (+) True G933533
TU1064301 lncRNA upstream 18859 539980 ~ 562659 (+) False G933532
TU1064325 lncRNA upstream 57900 518896 ~ 523618 (+) True G933552
TU1064318 lncRNA upstream 69745 508049 ~ 511773 (+) True G933545
TU1064366 lncRNA downstream 8862 604678 ~ 608464 (+) True G933586
TU1064353 lncRNA downstream 14641 610457 ~ 611537 (+) True G933576
TU1064426 lncRNA downstream 17448 613264 ~ 613590 (+) True G933635
TU1064427 lncRNA downstream 17941 613757 ~ 614019 (+) True G933636
TU1064430 lncRNA downstream 20606 616422 ~ 616648 (+) True G933639
XM_036936628.1 mRNA upstream 16942 561434 ~ 564576 (+) True LOC118937458
XM_021620013.2 mRNA upstream 39165 485692 ~ 542353 (+) False LOC110535152
XM_036934642.1 mRNA upstream 142988 392130 ~ 438530 (+) False slc22a13b
XM_036934643.1 mRNA upstream 146059 392112 ~ 435459 (+) False slc22a13b
XM_036934640.1 mRNA upstream 203155 340641 ~ 378363 (+) True cry-dash
XM_021620012.2 mRNA downstream 36307 632123 ~ 646961 (+) True LOC110535151
XM_036934648.1 mRNA downstream 146676 742492 ~ 859531 (+) False LOC110535150
XM_036934649.1 mRNA downstream 146676 742492 ~ 859531 (+) False LOC110535150
XM_036934650.1 mRNA downstream 146676 742492 ~ 859531 (+) False LOC110535150
XM_036934651.1 mRNA downstream 233672 829488 ~ 859531 (+) True LOC110535150
TU1064302 other upstream 18859 561653 ~ 562659 (+) False G933532
TU1064300 other upstream 18859 562014 ~ 562659 (+) True G933532
TU1064305 other upstream 42106 485830 ~ 539412 (+) True LOC110535152
TU1064355 other downstream 507 596323 ~ 604169 (+) True LOC110536523
TU1064476 other downstream 129371 725187 ~ 728205 (+) True G933679
TU1064658 other downstream 353715 949531 ~ 951584 (+) True G933799
TU1065095 other downstream 711711 1307527 ~ 1307759 (+) True G934169
TU1065194 other downstream 892260 1488076 ~ 1496014 (+) False G934256

Expression Profile