RNA id: TCONS_00039022


Basic Information

Item Value
RNA id TCONS_00039022
length 318
RNA type mRNA
GC content 0.47
exon number 2
gene id XLOC_019832
representative True

Chromosome Information

Item Value
chromosome id NC_007132.7
NCBI id CM002905.2
chromosome length 45934066
location 41597969 ~ 41624697 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATGCGTCGgtgtttattgttagttttttatttagtgcATGTATTGGCGGATACAGATTTTGCCAAATTTGACGGTGCACCGCCTTCTAAAATAGCTGTTGTTGGAGCAGGAATTGGAGGAACCGCTACAGCGCATTTCCTTAGGCAACATTTCGGGCCAGAAGTGAGAATTGATGTGTTTGAAAAGGGGTCAGTCGGTGGTCGTCTGGCTACTGTCACTGTGAACCACCAAGACTACGAGTCCGGTGGATCCATCATCCATTCCCTCAACCTGCACATGCAAGACTTTGTCCAGCAGTTGGGTCAGTTGCATTCATAA

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDART00000182365

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00039262 lncRNA downstream 30919 41590870 ~ 41593163 (-) True XLOC_019831
TCONS_00039008 lncRNA downstream 599144 41021833 ~ 41024938 (-) False XLOC_019823
TCONS_00039690 lncRNA downstream 1091659 40528787 ~ 40532423 (-) False XLOC_019814
TCONS_00038988 lncRNA downstream 1239981 40377506 ~ 40384101 (-) True XLOC_019812
TCONS_00039261 lncRNA downstream 1374057 40249111 ~ 40250025 (-) True XLOC_019809
TCONS_00039036 lncRNA upstream 419485 42043974 ~ 42048805 (-) True XLOC_019838
TCONS_00039691 lncRNA upstream 525871 42150360 ~ 42153664 (-) False XLOC_019840
TCONS_00039692 lncRNA upstream 525871 42150360 ~ 42156182 (-) False XLOC_019840
TCONS_00039693 lncRNA upstream 525871 42150360 ~ 42156184 (-) False XLOC_019840
TCONS_00039695 lncRNA upstream 525871 42150360 ~ 42156206 (-) False XLOC_019840
TCONS_00039019 mRNA downstream 3663 41597969 ~ 41620419 (-) False XLOC_019832
TCONS_00039020 mRNA downstream 6710 41614408 ~ 41617372 (-) True XLOC_019833
TCONS_00039018 mRNA downstream 35953 41557882 ~ 41588129 (-) True XLOC_019830
TCONS_00039017 mRNA downstream 78087 41535954 ~ 41545995 (-) True XLOC_019829
TCONS_00039015 mRNA downstream 254543 41314030 ~ 41369539 (-) True XLOC_019827
TCONS_00039023 mRNA upstream 157818 41782307 ~ 41818359 (-) True XLOC_019834
TCONS_00039024 mRNA upstream 194799 41819288 ~ 41839214 (-) False XLOC_019835
TCONS_00039025 mRNA upstream 195870 41820359 ~ 41839684 (-) False XLOC_019835
TCONS_00039026 mRNA upstream 195873 41820362 ~ 41839683 (-) False XLOC_019835
TCONS_00039027 mRNA upstream 204013 41828502 ~ 41838284 (-) True XLOC_019835
TCONS_00039016 other downstream 272417 41351545 ~ 41351665 (-) True XLOC_019828
TCONS_00039012 other downstream 372534 41251431 ~ 41251548 (-) True XLOC_019825
TCONS_00038990 other downstream 1212435 40403260 ~ 40411647 (-) True XLOC_019813
TCONS_00038972 other downstream 1542153 40077951 ~ 40081929 (-) True XLOC_019807
TCONS_00038955 other downstream 2356776 39267225 ~ 39267306 (-) True XLOC_019791
TCONS_00039031 other upstream 239165 41863654 ~ 41873097 (-) True XLOC_019836
TCONS_00039061 other upstream 1765912 43390401 ~ 43393079 (-) True XLOC_019853
TCONS_00039085 other upstream 2130488 43754977 ~ 43801511 (-) True XLOC_019865
TCONS_00039098 other upstream 2943691 44568180 ~ 44568266 (-) True XLOC_019876
TCONS_00039112 other upstream 3572853 45197342 ~ 45209405 (-) False XLOC_019883

Expression Profile

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