RNA id: TU1064430


Basic Information

Item Value
RNA id TU1064430
length 227
lncRNA type inter_gene
GC content 0.47
exon number 1
gene id G933639
representative True

Chromosome Information

Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 616422 ~ 616648 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

aggcagcaggctgttaaccagcctgccagcttagtggagtctggcacagtcagtgtagtcagctcagctttcccaattgagaccgtgtctgtgcctcgatctaggttgggcaaaacgaaacatggcggtgttcgccttagcaatctcactaggataaagacctcctccattcttgTCATTTTTGAAAGAGATTGTGAAATCTCACATCTTCATAggactacttaatg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1064427 lncRNA upstream 2403 613757 ~ 614019 (+) True G933636
TU1064426 lncRNA upstream 2832 613264 ~ 613590 (+) True G933635
TU1064353 lncRNA upstream 4885 610457 ~ 611537 (+) True G933576
TU1064366 lncRNA upstream 7958 604678 ~ 608464 (+) True G933586
TU1064363 lncRNA upstream 26625 584393 ~ 589797 (+) False G933585
TU1064438 lncRNA downstream 4738 621386 ~ 621671 (+) True G933647
TU1064441 lncRNA downstream 8517 625165 ~ 625398 (+) True G933650
TU1064473 lncRNA downstream 31204 647852 ~ 648073 (+) True G933676
TU1064474 lncRNA downstream 34940 651588 ~ 652256 (+) True G933677
TU1064481 lncRNA downstream 121569 738217 ~ 738520 (+) True G933684
XM_036934647.1 mRNA upstream 12083 575640 ~ 604339 (+) False LOC110536523
XM_036936628.1 mRNA upstream 51846 561434 ~ 564576 (+) True LOC118937458
XM_021620013.2 mRNA upstream 74069 485692 ~ 542353 (+) False LOC110535152
XM_036934642.1 mRNA upstream 177892 392130 ~ 438530 (+) False slc22a13b
XM_036934643.1 mRNA upstream 180963 392112 ~ 435459 (+) False slc22a13b
XM_021620012.2 mRNA downstream 15475 632123 ~ 646961 (+) True LOC110535151
XM_036934648.1 mRNA downstream 125844 742492 ~ 859531 (+) False LOC110535150
XM_036934649.1 mRNA downstream 125844 742492 ~ 859531 (+) False LOC110535150
XM_036934650.1 mRNA downstream 125844 742492 ~ 859531 (+) False LOC110535150
XM_036934651.1 mRNA downstream 212840 829488 ~ 859531 (+) True LOC110535150
TU1064355 other upstream 12253 596323 ~ 604169 (+) True LOC110536523
TU1064302 other upstream 53763 561653 ~ 562659 (+) False G933532
TU1064300 other upstream 53763 562014 ~ 562659 (+) True G933532
TU1064305 other upstream 77010 485830 ~ 539412 (+) True LOC110535152
TU1064476 other downstream 108539 725187 ~ 728205 (+) True G933679
TU1064658 other downstream 332883 949531 ~ 951584 (+) True G933799
TU1065095 other downstream 690879 1307527 ~ 1307759 (+) True G934169
TU1065194 other downstream 871428 1488076 ~ 1496014 (+) False G934256
TU1065592 other downstream 1209979 1826627 ~ 1827366 (+) True G934579

Expression Profile