RNA id: TU1064441


Basic Information

Item Value
RNA id TU1064441
length 234
lncRNA type inter_gene
GC content 0.50
exon number 1
gene id G933650
representative True

Chromosome Information

Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 625165 ~ 625398 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CAGGGACTGGGACAGAGAGTTAAAACAGGGACTGGGACAGACAGTGACTGGGACAGAGAGTTAAAACAGGGACTGGGACAGACAGTGACTGGGACAGAGAGTTAAAACAGGGACTGGGCCAGACAGGGACCAACAGCTTCTTTCAGCTAAAGATTTGACTCCAGATGCTGAAGACCACATGATGCTTGTTGGCTGCGACTGTGTTTGTGCTCCAGtaatcttctgttctctagg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1064438 lncRNA upstream 3494 621386 ~ 621671 (+) True G933647
TU1064430 lncRNA upstream 8517 616422 ~ 616648 (+) True G933639
TU1064427 lncRNA upstream 11146 613757 ~ 614019 (+) True G933636
TU1064426 lncRNA upstream 11575 613264 ~ 613590 (+) True G933635
TU1064353 lncRNA upstream 13628 610457 ~ 611537 (+) True G933576
TU1064473 lncRNA downstream 22454 647852 ~ 648073 (+) True G933676
TU1064474 lncRNA downstream 26190 651588 ~ 652256 (+) True G933677
TU1064481 lncRNA downstream 112819 738217 ~ 738520 (+) True G933684
TU1064483 lncRNA downstream 113316 738714 ~ 739320 (+) True G933686
TU1064542 lncRNA downstream 150978 776376 ~ 776878 (+) True G933718
XM_036934647.1 mRNA upstream 20826 575640 ~ 604339 (+) False LOC110536523
XM_036936628.1 mRNA upstream 60589 561434 ~ 564576 (+) True LOC118937458
XM_021620013.2 mRNA upstream 82812 485692 ~ 542353 (+) False LOC110535152
XM_036934642.1 mRNA upstream 186635 392130 ~ 438530 (+) False slc22a13b
XM_036934643.1 mRNA upstream 189706 392112 ~ 435459 (+) False slc22a13b
XM_021620012.2 mRNA downstream 6725 632123 ~ 646961 (+) True LOC110535151
XM_036934648.1 mRNA downstream 117094 742492 ~ 859531 (+) False LOC110535150
XM_036934649.1 mRNA downstream 117094 742492 ~ 859531 (+) False LOC110535150
XM_036934650.1 mRNA downstream 117094 742492 ~ 859531 (+) False LOC110535150
XM_036934651.1 mRNA downstream 204090 829488 ~ 859531 (+) True LOC110535150
TU1064355 other upstream 20996 596323 ~ 604169 (+) True LOC110536523
TU1064302 other upstream 62506 561653 ~ 562659 (+) False G933532
TU1064300 other upstream 62506 562014 ~ 562659 (+) True G933532
TU1064305 other upstream 85753 485830 ~ 539412 (+) True LOC110535152
TU1064476 other downstream 99789 725187 ~ 728205 (+) True G933679
TU1064658 other downstream 324133 949531 ~ 951584 (+) True G933799
TU1065095 other downstream 682129 1307527 ~ 1307759 (+) True G934169
TU1065194 other downstream 862678 1488076 ~ 1496014 (+) False G934256
TU1065592 other downstream 1201229 1826627 ~ 1827366 (+) True G934579

Expression Profile