RNA id: TU1064481


Basic Information

Item Value
RNA id TU1064481
length 304
lncRNA type inter_gene
GC content 0.45
exon number 1
gene id G933684
representative True

Chromosome Information

Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 738217 ~ 738520 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tatggaatgttgtttgggtctctgcgtatggaatgcattttgggtctctgcgtatggaatgccgtttgggtctttacgtatggaactcacAGAAATACGTAATACGGTGTGCGTAatacggtgtgtttgggatccttgtcatgctgaaagaaccagccacgtttcatcttcaatgcccttgctgatggaaggaggttttcactcaaaatctcacgatacatggcccccttcattctttcctttacacggatcagtcgtcctggtacctttgcagaaaaacagtcccaaagcatgatgtttccac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1064474 lncRNA upstream 85961 651588 ~ 652256 (+) True G933677
TU1064473 lncRNA upstream 90144 647852 ~ 648073 (+) True G933676
TU1064441 lncRNA upstream 112819 625165 ~ 625398 (+) True G933650
TU1064438 lncRNA upstream 116546 621386 ~ 621671 (+) True G933647
TU1064430 lncRNA upstream 121569 616422 ~ 616648 (+) True G933639
TU1064483 lncRNA downstream 194 738714 ~ 739320 (+) True G933686
TU1064542 lncRNA downstream 37856 776376 ~ 776878 (+) True G933718
TU1064583 lncRNA downstream 111753 850273 ~ 851515 (+) True G933755
TU1064515 lncRNA downstream 127362 865882 ~ 873581 (+) True G933692
TU1064590 lncRNA downstream 135201 873721 ~ 875058 (+) True G933762
XM_021620012.2 mRNA upstream 91256 632123 ~ 646961 (+) True LOC110535151
XM_036934647.1 mRNA upstream 133878 575640 ~ 604339 (+) False LOC110536523
XM_036936628.1 mRNA upstream 173641 561434 ~ 564576 (+) True LOC118937458
XM_021620013.2 mRNA upstream 195864 485692 ~ 542353 (+) False LOC110535152
XM_036934642.1 mRNA upstream 299687 392130 ~ 438530 (+) False slc22a13b
XM_036934648.1 mRNA downstream 3972 742492 ~ 859531 (+) False LOC110535150
XM_036934649.1 mRNA downstream 3972 742492 ~ 859531 (+) False LOC110535150
XM_036934650.1 mRNA downstream 3972 742492 ~ 859531 (+) False LOC110535150
XM_036934651.1 mRNA downstream 90968 829488 ~ 859531 (+) True LOC110535150
XM_021620025.2 mRNA downstream 614469 1352989 ~ 1364272 (+) True fam162a
TU1064476 other upstream 10012 725187 ~ 728205 (+) True G933679
TU1064355 other upstream 134048 596323 ~ 604169 (+) True LOC110536523
TU1064302 other upstream 175558 561653 ~ 562659 (+) False G933532
TU1064300 other upstream 175558 562014 ~ 562659 (+) True G933532
TU1064305 other upstream 198805 485830 ~ 539412 (+) True LOC110535152
TU1064658 other downstream 211011 949531 ~ 951584 (+) True G933799
TU1065095 other downstream 569007 1307527 ~ 1307759 (+) True G934169
TU1065194 other downstream 749556 1488076 ~ 1496014 (+) False G934256
TU1065592 other downstream 1088107 1826627 ~ 1827366 (+) True G934579
TU1065679 other downstream 1170140 1908660 ~ 1909080 (+) True G934640

Expression Profile