RNA id: TU1064515


Basic Information

Item Value
RNA id TU1064515
length 490
lncRNA type inter_gene
GC content 0.43
exon number 2
gene id G933692
representative True

Chromosome Information

Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 865882 ~ 873581 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gagagggtgtgtgtacgggaggggtgtgtgtatgtggggtgtgtgtgggagggtgtgtgtgcatggggggggggtgtaagggagggtatatgtgtgtgtatgggagggtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtacagtatgtgagagAGCGATATGATACAGACAGTAGAGTGGACTGGGATGTGCTGTGAAAAGTAATGATTTATACAGTTTATGGAGAGGATCTTGTAATATTTTAAGGAGTTTATTAGGCTGTAAACCTCACATCTAAACATCCCCAATGTCTCCTTTATGTCAAGTGGCTAAtaaacaaaatgttttaaaacattgtatATGTTCCTGTTTGTGTCATTTCAATGTTGACACACTAAGTATATTTGTCATTCAGTCTTTCGTAGTGGGGGGTACCAAACACAGCTACACAACACTACAGAACAATATAGttgttgtcctgcggttttgttgtcctgcggtattgttgtcc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1064583 lncRNA upstream 14367 850273 ~ 851515 (+) True G933755
TU1064542 lncRNA upstream 89004 776376 ~ 776878 (+) True G933718
TU1064483 lncRNA upstream 126562 738714 ~ 739320 (+) True G933686
TU1064481 lncRNA upstream 127362 738217 ~ 738520 (+) True G933684
TU1064474 lncRNA upstream 213626 651588 ~ 652256 (+) True G933677
TU1064590 lncRNA downstream 140 873721 ~ 875058 (+) True G933762
TU1064594 lncRNA downstream 9052 882633 ~ 883873 (+) False G933765
TU1064597 lncRNA downstream 9052 882633 ~ 883779 (+) False G933765
TU1064595 lncRNA downstream 9923 883504 ~ 889992 (+) False G933765
TU1064600 lncRNA downstream 9923 883504 ~ 889992 (+) True G933765
XM_036934648.1 mRNA upstream 6351 742492 ~ 859531 (+) False LOC110535150
XM_036934649.1 mRNA upstream 6351 742492 ~ 859531 (+) False LOC110535150
XM_036934650.1 mRNA upstream 6351 742492 ~ 859531 (+) False LOC110535150
XM_036934651.1 mRNA upstream 6351 829488 ~ 859531 (+) True LOC110535150
XM_021620012.2 mRNA upstream 218921 632123 ~ 646961 (+) True LOC110535151
XM_021620025.2 mRNA downstream 479408 1352989 ~ 1364272 (+) True fam162a
XM_036934654.1 mRNA downstream 515792 1389373 ~ 1479628 (+) False nktr
XM_036934656.1 mRNA downstream 515793 1389374 ~ 1479628 (+) False nktr
XM_036934655.1 mRNA downstream 516282 1389863 ~ 1479628 (+) False nktr
XM_036934657.1 mRNA downstream 551914 1425495 ~ 1479628 (+) True nktr
TU1064476 other upstream 137677 725187 ~ 728205 (+) True G933679
TU1064355 other upstream 261713 596323 ~ 604169 (+) True LOC110536523
TU1064302 other upstream 303223 561653 ~ 562659 (+) False G933532
TU1064300 other upstream 303223 562014 ~ 562659 (+) True G933532
TU1064305 other upstream 326470 485830 ~ 539412 (+) True LOC110535152
TU1064658 other downstream 75950 949531 ~ 951584 (+) True G933799
TU1065095 other downstream 433946 1307527 ~ 1307759 (+) True G934169
TU1065194 other downstream 614495 1488076 ~ 1496014 (+) False G934256
TU1065592 other downstream 953046 1826627 ~ 1827366 (+) True G934579
TU1065679 other downstream 1035079 1908660 ~ 1909080 (+) True G934640

Expression Profile