RNA id: TCONS_00039025


Basic Information

Item Value
RNA id TCONS_00039025
length 2262
RNA type mRNA
GC content 0.49
exon number 15
gene id XLOC_019835
representative False

Chromosome Information

Item Value
chromosome id NC_007132.7
NCBI id CM002905.2
chromosome length 45934066
location 41819288 ~ 41839684 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TGTTTCGAACGCGTAATTAACTTTAACCGCGCTGTGTCAGCCTCCGATTAGCCCATTTATTTACCTCtttacttttttctgtttttaaacactCGAATTGTAACCTATGACGGTATTTGTTTGTAAATCACGTACCTTACTCTGGCCAAAGCAACCCCACGCAAAACAGCAATCTCACTACAGGCCTGATAGGAGGAGCTCTTGTGTTTGACTTCTTCTTCGTCGTCATCGGGTTCTTCTTCTGCTAAAGTTGTTGGGATACTAACTGTGCATTACTGACACCAACTGGATAGaTGTTACCCAATCACAGCGCGCAGGGCGGTGCTGAGAGACTGCGCAGTGGAAGCTTCTGGAAGCGAGCTTCTTTTCCGTCTCCACGAGAAGCTGTGCTGTAGTTTTCAGGAGAATGGCCGCGGTAAAAGCACTTAATCCGAAAGCCGAGGTCGCCAGGGCTCACGCGGCTCTTGCTGTGAACATCAGCGCGGCCCGCGGACTCCAGGACGTCCTGAAAAGTAACCTGGGCCCGAAGGGAACAATGAAAATGCTTGTGTCTGGTGCAGGAGACATCAAGCTCACCAAAGATGGGAACGTTTTGCTTCATGAAATGCAAATCCAGCATCCCACTGCTTCATTGATTGCCAAGGTGGCCACAGCACAGGATGACATCACGGGAGATGGCACAACATCTAATGTGCTTATCATTGGAGAGCTCCTCAAGCAGGCGGACCTCTATGTTTCTGAGGGTCTTCATCCAAGGGTGATTGCAGAGGGGTTTGAGGCGGCTAAAGACAAGGCCCTTGCAGTGCTTGAAGAGGTAAAAGTTGCAAAGGAGATGGACCGAGAGACTCTCATCAATGTAGCCAGGACATCACTCAGAACCAAGGTCCACACAGAGCTGGCCGATTTACTAACAGAGGCTGTAGTGGATGCTGTACTGGCCATAAGGAAACCCAACGAGCCCATTGACCTCTACATGGTGGAGATTATGGAGATGAAACACAAAACCGACAGTGATACTCAactgaTCAGAGGGTTGGTGTTGGACCACGGAGCCAGACATCCTGACATGAAGAAGAGAATAGAAGATGCTTTCATTCTCACCTGCAACGTTTCCTTGGAATACGAGAAAACCGAAGTGAACTCCGGGTTTTTCTACAAGAGCGCAGACGAGAGAGACAAGCTGGTGAAAGCTGAGAGGAAGTTCATTGAAGATCGTGTGATGAAAATAATCGACCTGAAGAATAAAGTGTGCGCTGATAATAAAAAGGGCTTTGTGGTCATCAATCAGAAGGGTATTGATCCATTCTCTCTGGATGCGCTGGCCAAAGAGGGCATTGTGGCTCTGCGCCGTGCAAAGAGACGGAATATGGAAAGGCTGACTCTGGCATGTGGTGGTGTAGCAATGAACTCTGTGGAGGATCTCACGCCAGAGTGTTTGGGACACGCTGGTCTTGTGTACGAGTACACACTGGGTGAGGAGAAATTCACGTTCATTGAGAACTGTAGCAACCCTCGTTCTGTGACCCTGCTGGTGAAAGGCCCAAACAAGCACACCCTGACACAGATCAAAGACGCAGTGAGAGACGGACTCAGAGCTGTCAAAAACGCCATTGAAGATGgcTCTGTTGTAGCTGGGGCTGGTGCATTTGAGGTAGCCGTGGCTGATGCATTGGTCAAACACAAGCCCAAAGTAAAGGGACGAGCCCAGCTGGGTGTGCAGGCGTTTGCTGATGCTCTTCTTGTCATCCCTAAAGTTCTGGCTCAGAATTCAGGCTACGACCCACAAGAGACTCTTGTGAAGCTGCAGAGTGAATTCAAAGAGGCTGGACAGTTGGTGGGAGTTGACCTAAGCACAGGCATGTTTATGGTTGCTGGAGAGGCTGGTGTATGGGACAACTACAGTGTGAAAAAGCAGCTGCTTCACTCCTGCACTGTAATCGCCAGTAATATCCTGCTGGTGGATGAGATCATGAGGGCTGGAATGTCTTCACTCAAAGGCTAAATGAAATCCGCCATCAAGAAACCCACCCGCTAGGTTGAAGAGGAGGAAGAAACCACCCAGCGCTCTGCGGTTATCCTGCTCGAACTCAAGGCTGCAGTCCCCCGTTGTTGTCGTTAAAATATCTGTCTGCTCATTCTGTGCCCAACCAGTTCTGTCCATATTTTTGGCCTAGGAAATGTCCCTTCCAGTCAATTGGTTTATTTAAGAAGTTGTGTTACAGATGCACTGAATCGCAATACATTTCCCTTTGTACCATTAAA

Function

GO:

id name namespace
GO:0006457 protein folding biological_process
GO:0005832 chaperonin-containing T-complex cellular_component
GO:0005737 cytoplasm cellular_component
GO:0005524 ATP binding molecular_function
GO:0000166 nucleotide binding molecular_function
GO:0051082 unfolded protein binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-011018-2 Predicted to enable unfolded protein binding activity. Predicted to be involved in protein folding. Predicted to be part of chaperonin-containing T-complex. Orthologous to several human genes including CCT6A (chaperonin containing TCP1 subunit 6A).

Ensembl:

ensembl_id ENSDART00000137630

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00039262 lncRNA downstream 227196 41590870 ~ 41593163 (-) True XLOC_019831
TCONS_00039008 lncRNA downstream 795421 41021833 ~ 41024938 (-) False XLOC_019823
TCONS_00039690 lncRNA downstream 1287936 40528787 ~ 40532423 (-) False XLOC_019814
TCONS_00038988 lncRNA downstream 1436258 40377506 ~ 40384101 (-) True XLOC_019812
TCONS_00039261 lncRNA downstream 1570334 40249111 ~ 40250025 (-) True XLOC_019809
TCONS_00039036 lncRNA upstream 204290 42043974 ~ 42048805 (-) True XLOC_019838
TCONS_00039691 lncRNA upstream 310676 42150360 ~ 42153664 (-) False XLOC_019840
TCONS_00039692 lncRNA upstream 310676 42150360 ~ 42156182 (-) False XLOC_019840
TCONS_00039693 lncRNA upstream 310676 42150360 ~ 42156184 (-) False XLOC_019840
TCONS_00039695 lncRNA upstream 310676 42150360 ~ 42156206 (-) False XLOC_019840
TCONS_00039023 mRNA downstream 2000 41782307 ~ 41818359 (-) True XLOC_019834
TCONS_00039021 mRNA downstream 195662 41616633 ~ 41624697 (-) False XLOC_019832
TCONS_00039022 mRNA downstream 195870 41624082 ~ 41624489 (-) True XLOC_019832
TCONS_00039019 mRNA downstream 199940 41597969 ~ 41620419 (-) False XLOC_019832
TCONS_00039028 mRNA upstream 23856 41863540 ~ 41873065 (-) False XLOC_019836
TCONS_00039029 mRNA upstream 23935 41863619 ~ 41870029 (-) False XLOC_019836
TCONS_00039030 mRNA upstream 23936 41863620 ~ 41873584 (-) False XLOC_019836
TCONS_00039034 mRNA upstream 64076 41903760 ~ 42007213 (-) False XLOC_019837
TCONS_00039033 mRNA upstream 64076 41903760 ~ 42007213 (-) False XLOC_019837
TCONS_00039016 other downstream 468694 41351545 ~ 41351665 (-) True XLOC_019828
TCONS_00039012 other downstream 568811 41251431 ~ 41251548 (-) True XLOC_019825
TCONS_00038990 other downstream 1408712 40403260 ~ 40411647 (-) True XLOC_019813
TCONS_00038972 other downstream 1738430 40077951 ~ 40081929 (-) True XLOC_019807
TCONS_00038955 other downstream 2553053 39267225 ~ 39267306 (-) True XLOC_019791
TCONS_00039031 other upstream 23970 41863654 ~ 41873097 (-) True XLOC_019836
TCONS_00039061 other upstream 1550717 43390401 ~ 43393079 (-) True XLOC_019853
TCONS_00039085 other upstream 1915293 43754977 ~ 43801511 (-) True XLOC_019865
TCONS_00039098 other upstream 2728496 44568180 ~ 44568266 (-) True XLOC_019876
TCONS_00039112 other upstream 3357658 45197342 ~ 45209405 (-) False XLOC_019883

Expression Profile

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