RNA id: TU1064645


Basic Information

Item Value
RNA id TU1064645
length 306
lncRNA type antisense_over
GC content 0.56
exon number 2
gene id G933786
representative True

Chromosome Information

Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 934522 ~ 934929 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ACCATCGAAGCTGCCGTGCTCTGCGCAGTACTGGAGCAGTTTGCTGTACGTTTCGTTGGAGGGTCGGAACACGAACACGCCGGAGTTGAAACAGTCTGGCCAGCCGGGATCCGGGGCCGCAGACAGCTCCTCTCTGTCAAACAACTCATCTATGTTCTGTACCACCAGTGTGTAAGGGTCCAGCAGTGTAGCTTGGTGAAGGTGACTCCCAGGTCAGGTCTCTTCATCAGGTCCAGGTGAGCTGCGTCTCCACTGTCCAACACATCCACCAACAGTACCTCGTCAAAGATCTTGAGAAGCACTCcc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1064639 lncRNA upstream 16286 917402 ~ 918236 (+) True G933781
TU1064604 lncRNA upstream 19076 894804 ~ 915446 (+) True G933768
TU1064595 lncRNA upstream 44530 883504 ~ 889992 (+) False G933765
TU1064600 lncRNA upstream 44530 883504 ~ 889992 (+) True G933765
TU1064594 lncRNA upstream 50649 882633 ~ 883873 (+) False G933765
TU1064706 lncRNA downstream 144981 1079910 ~ 1080326 (+) True G933844
TU1064955 lncRNA downstream 194144 1129073 ~ 1129359 (+) True G934038
TU1064958 lncRNA downstream 195951 1130880 ~ 1131170 (+) True G934041
TU1064960 lncRNA downstream 196645 1131574 ~ 1131805 (+) True G934043
TU1064962 lncRNA downstream 207476 1142405 ~ 1142623 (+) True G934045
XM_036934648.1 mRNA upstream 74991 742492 ~ 859531 (+) False LOC110535150
XM_036934649.1 mRNA upstream 74991 742492 ~ 859531 (+) False LOC110535150
XM_036934650.1 mRNA upstream 74991 742492 ~ 859531 (+) False LOC110535150
XM_036934651.1 mRNA upstream 74991 829488 ~ 859531 (+) True LOC110535150
XM_021620012.2 mRNA upstream 287561 632123 ~ 646961 (+) True LOC110535151
XM_021620025.2 mRNA downstream 418060 1352989 ~ 1364272 (+) True fam162a
XM_036934654.1 mRNA downstream 454444 1389373 ~ 1479628 (+) False nktr
XM_036934656.1 mRNA downstream 454445 1389374 ~ 1479628 (+) False nktr
XM_036934655.1 mRNA downstream 454934 1389863 ~ 1479628 (+) False nktr
XM_036934657.1 mRNA downstream 490566 1425495 ~ 1479628 (+) True nktr
TU1064476 other upstream 206317 725187 ~ 728205 (+) True G933679
TU1064355 other upstream 330353 596323 ~ 604169 (+) True LOC110536523
TU1064302 other upstream 371863 561653 ~ 562659 (+) False G933532
TU1064300 other upstream 371863 562014 ~ 562659 (+) True G933532
TU1064305 other upstream 395110 485830 ~ 539412 (+) True LOC110535152
TU1064658 other downstream 14602 949531 ~ 951584 (+) True G933799
TU1065095 other downstream 372598 1307527 ~ 1307759 (+) True G934169
TU1065194 other downstream 553147 1488076 ~ 1496014 (+) False G934256
TU1065592 other downstream 891698 1826627 ~ 1827366 (+) True G934579
TU1065679 other downstream 973731 1908660 ~ 1909080 (+) True G934640

Expression Profile