RNA id: TCONS_00039027


Basic Information

Item Value
RNA id TCONS_00039027
length 791
RNA type mRNA
GC content 0.49
exon number 7
gene id XLOC_019835
representative True

Chromosome Information

Item Value
chromosome id NC_007132.7
NCBI id CM002905.2
chromosome length 45934066
location 41819288 ~ 41839684 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GGAAGCTTCTGGAAGCGAGCTTCTTTTCCGTCTCCACGAGAAGCTGTGCTGTAGTTTTCAGGAGAATGGCCGCGGTAAAAGCACTTAATCCGAAAGCCGAGGTCGCCAGGGCTCACGCGGCTCTTGCTGTGAACATCAGCGCGGCCCGCGGACTCCAGGACGTCCTGAAAAGTAACCTGGGCCCGAAGGGAACAATGAAAATGCTTGTGTCTGGTGCAGGAGACATCAAGCTCACCAAAGATGGGAACGTTTTGCTTCATGAAATGCAAATCCAGCATCCCACTGCTTCATTGATTGCCAAGGCGGCTAAAGACAAGGCCCTTGCAGTGCTTGAAGAGGTAAAAGTTGCAAAGGAGATGGACCGAGAGACTCTCATCAATGTAGCCAGGACATCACTCAGAACCAAGGTCCACACAGAGCTGGCCGATTTACTAACAGAGGCTGTAGTGGATGCTGTACTGGCCATAAGGAAACCCAACGAGCCCATTGACCTCTACATGGTGGAGATTATGGAGATGAAACACAAAACCGACAGTGATACTCAactgaTCAGAGGGTTGGTGTTGGACCACGGAGCCAGACATCCTGACATGAAGAAGAGAATAGAAGATGCTTTCATTCTCACCTGCAACGTTTCCTTGGAATACGAGAAAACCGAAGTGAACTCCGGGTTTTTCTACAAGAGCGCAGACGAGAGAGACAAGCTGGTGAAAGCTGAGAGGAAGTTCATTGAAGATCGTGTGATGAAAATAATCGACCTGAAGAATAAAGTGTGCGCTGATAATAAAAAG

Function

GO:

id name namespace
GO:0006457 protein folding biological_process
GO:0005832 chaperonin-containing T-complex cellular_component
GO:0005737 cytoplasm cellular_component
GO:0005524 ATP binding molecular_function
GO:0000166 nucleotide binding molecular_function
GO:0051082 unfolded protein binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-011018-2 Predicted to enable unfolded protein binding activity. Predicted to be involved in protein folding. Predicted to be part of chaperonin-containing T-complex. Orthologous to several human genes including CCT6A (chaperonin containing TCP1 subunit 6A).

Ensembl:

ensembl_id ENSDART00000141067

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00039262 lncRNA downstream 235339 41590870 ~ 41593163 (-) True XLOC_019831
TCONS_00039008 lncRNA downstream 803564 41021833 ~ 41024938 (-) False XLOC_019823
TCONS_00039690 lncRNA downstream 1296079 40528787 ~ 40532423 (-) False XLOC_019814
TCONS_00038988 lncRNA downstream 1444401 40377506 ~ 40384101 (-) True XLOC_019812
TCONS_00039261 lncRNA downstream 1578477 40249111 ~ 40250025 (-) True XLOC_019809
TCONS_00039036 lncRNA upstream 205690 42043974 ~ 42048805 (-) True XLOC_019838
TCONS_00039691 lncRNA upstream 312076 42150360 ~ 42153664 (-) False XLOC_019840
TCONS_00039692 lncRNA upstream 312076 42150360 ~ 42156182 (-) False XLOC_019840
TCONS_00039693 lncRNA upstream 312076 42150360 ~ 42156184 (-) False XLOC_019840
TCONS_00039695 lncRNA upstream 312076 42150360 ~ 42156206 (-) False XLOC_019840
TCONS_00039023 mRNA downstream 10143 41782307 ~ 41818359 (-) True XLOC_019834
TCONS_00039021 mRNA downstream 203805 41616633 ~ 41624697 (-) False XLOC_019832
TCONS_00039022 mRNA downstream 204013 41624082 ~ 41624489 (-) True XLOC_019832
TCONS_00039019 mRNA downstream 208083 41597969 ~ 41620419 (-) False XLOC_019832
TCONS_00039028 mRNA upstream 25256 41863540 ~ 41873065 (-) False XLOC_019836
TCONS_00039029 mRNA upstream 25335 41863619 ~ 41870029 (-) False XLOC_019836
TCONS_00039030 mRNA upstream 25336 41863620 ~ 41873584 (-) False XLOC_019836
TCONS_00039034 mRNA upstream 65476 41903760 ~ 42007213 (-) False XLOC_019837
TCONS_00039033 mRNA upstream 65476 41903760 ~ 42007213 (-) False XLOC_019837
TCONS_00039016 other downstream 476837 41351545 ~ 41351665 (-) True XLOC_019828
TCONS_00039012 other downstream 576954 41251431 ~ 41251548 (-) True XLOC_019825
TCONS_00038990 other downstream 1416855 40403260 ~ 40411647 (-) True XLOC_019813
TCONS_00038972 other downstream 1746573 40077951 ~ 40081929 (-) True XLOC_019807
TCONS_00038955 other downstream 2561196 39267225 ~ 39267306 (-) True XLOC_019791
TCONS_00039031 other upstream 25370 41863654 ~ 41873097 (-) True XLOC_019836
TCONS_00039061 other upstream 1552117 43390401 ~ 43393079 (-) True XLOC_019853
TCONS_00039085 other upstream 1916693 43754977 ~ 43801511 (-) True XLOC_019865
TCONS_00039098 other upstream 2729896 44568180 ~ 44568266 (-) True XLOC_019876
TCONS_00039112 other upstream 3359058 45197342 ~ 45209405 (-) False XLOC_019883

Expression Profile

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