RNA id: TU1064963


Basic Information

Item Value
RNA id TU1064963
length 277
lncRNA type inter_gene
GC content 0.32
exon number 1
gene id G934046
representative True

Chromosome Information

Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 1144458 ~ 1144734 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tatatgttgtattgtagtggtggtattatacatgttgtattgtagtggtggtattatacatgttgtattgtagtggtgttattatacatgttgtattgtagtggtggtattatacatgttgtattgtagtggtggtattatacatgttgtattgtagtggtggtattatacatgttgtattgtagtggtggtattatacatgttgtattgtagtggtggtatcatacatgttgtattgtagtggtggtattatacatgttgtattgtagtggtggtg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1064962 lncRNA upstream 1835 1142405 ~ 1142623 (+) True G934045
TU1064960 lncRNA upstream 12653 1131574 ~ 1131805 (+) True G934043
TU1064958 lncRNA upstream 13288 1130880 ~ 1131170 (+) True G934041
TU1064955 lncRNA upstream 15099 1129073 ~ 1129359 (+) True G934038
TU1064706 lncRNA upstream 64132 1079910 ~ 1080326 (+) True G933844
TU1064970 lncRNA downstream 4901 1149635 ~ 1149903 (+) True G934052
TU1065092 lncRNA downstream 155007 1299741 ~ 1300097 (+) True G934166
TU1065127 lncRNA downstream 172899 1317633 ~ 1324592 (+) False G934194
TU1065123 lncRNA downstream 173430 1318164 ~ 1324592 (+) True G934194
TU1065119 lncRNA downstream 175491 1320225 ~ 1326628 (+) True G934193
XM_036934648.1 mRNA upstream 284927 742492 ~ 859531 (+) False LOC110535150
XM_036934649.1 mRNA upstream 284927 742492 ~ 859531 (+) False LOC110535150
XM_036934650.1 mRNA upstream 284927 742492 ~ 859531 (+) False LOC110535150
XM_036934651.1 mRNA upstream 284927 829488 ~ 859531 (+) True LOC110535150
XM_021620012.2 mRNA upstream 497497 632123 ~ 646961 (+) True LOC110535151
XM_021620025.2 mRNA downstream 208255 1352989 ~ 1364272 (+) True fam162a
XM_036934654.1 mRNA downstream 244639 1389373 ~ 1479628 (+) False nktr
XM_036934656.1 mRNA downstream 244640 1389374 ~ 1479628 (+) False nktr
XM_036934655.1 mRNA downstream 245129 1389863 ~ 1479628 (+) False nktr
XM_036934657.1 mRNA downstream 280761 1425495 ~ 1479628 (+) True nktr
TU1064658 other upstream 192874 949531 ~ 951584 (+) True G933799
TU1064476 other upstream 416253 725187 ~ 728205 (+) True G933679
TU1064355 other upstream 540289 596323 ~ 604169 (+) True LOC110536523
TU1064302 other upstream 581799 561653 ~ 562659 (+) False G933532
TU1065095 other downstream 162793 1307527 ~ 1307759 (+) True G934169
TU1065194 other downstream 343342 1488076 ~ 1496014 (+) False G934256
TU1065592 other downstream 681893 1826627 ~ 1827366 (+) True G934579
TU1065679 other downstream 763926 1908660 ~ 1909080 (+) True G934640
TU1067186 other downstream 2405305 3550039 ~ 3550487 (+) True G935846

Expression Profile