RNA id: TU1065092


Basic Information

Item Value
RNA id TU1065092
length 357
lncRNA type inter_gene
GC content 0.46
exon number 1
gene id G934166
representative True

Chromosome Information

Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 1299741 ~ 1300097 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ctgtatgtactgtatatctgtcgtAGTGTCCCCCTCTGTATGTACTGTTTATCTGTCGTAGTGtccccctctgtgtctctgtatgtactgtatatctgtcgtagtgtccccctctgtctctctgtatgtactgtatatctgtcgtagtgtccccctctgtatgtactgtatatttgtcgtagtgtccccctctgtctctctgtatgtactgtatatctgccgtagtgtccccctctgtatgtactgtatatctgtcgtAGTGTCCCCCTCTGTACGTACTGTATATTTGTCgtagtgtccccctctgtctctctgtatgtactgtatatctgtcgtAGTGCCCccctctgtatgtac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1064970 lncRNA upstream 149838 1149635 ~ 1149903 (+) True G934052
TU1064963 lncRNA upstream 155007 1144458 ~ 1144734 (+) True G934046
TU1064962 lncRNA upstream 157118 1142405 ~ 1142623 (+) True G934045
TU1064960 lncRNA upstream 167936 1131574 ~ 1131805 (+) True G934043
TU1064958 lncRNA upstream 168571 1130880 ~ 1131170 (+) True G934041
TU1065127 lncRNA downstream 17536 1317633 ~ 1324592 (+) False G934194
TU1065123 lncRNA downstream 18067 1318164 ~ 1324592 (+) True G934194
TU1065119 lncRNA downstream 20128 1320225 ~ 1326628 (+) True G934193
TU1065152 lncRNA downstream 63272 1363369 ~ 1367301 (+) True G934219
TU1065189 lncRNA downstream 186826 1486923 ~ 1489972 (+) True G934254
XM_036934648.1 mRNA upstream 440210 742492 ~ 859531 (+) False LOC110535150
XM_036934649.1 mRNA upstream 440210 742492 ~ 859531 (+) False LOC110535150
XM_036934650.1 mRNA upstream 440210 742492 ~ 859531 (+) False LOC110535150
XM_036934651.1 mRNA upstream 440210 829488 ~ 859531 (+) True LOC110535150
XM_021620012.2 mRNA upstream 652780 632123 ~ 646961 (+) True LOC110535151
XM_021620025.2 mRNA downstream 52892 1352989 ~ 1364272 (+) True fam162a
XM_036934654.1 mRNA downstream 89276 1389373 ~ 1479628 (+) False nktr
XM_036934656.1 mRNA downstream 89277 1389374 ~ 1479628 (+) False nktr
XM_036934655.1 mRNA downstream 89766 1389863 ~ 1479628 (+) False nktr
XM_036934657.1 mRNA downstream 125398 1425495 ~ 1479628 (+) True nktr
TU1064658 other upstream 348157 949531 ~ 951584 (+) True G933799
TU1064476 other upstream 571536 725187 ~ 728205 (+) True G933679
TU1064355 other upstream 695572 596323 ~ 604169 (+) True LOC110536523
TU1064302 other upstream 737082 561653 ~ 562659 (+) False G933532
TU1065095 other downstream 7430 1307527 ~ 1307759 (+) True G934169
TU1065194 other downstream 187979 1488076 ~ 1496014 (+) False G934256
TU1065592 other downstream 526530 1826627 ~ 1827366 (+) True G934579
TU1065679 other downstream 608563 1908660 ~ 1909080 (+) True G934640
TU1067186 other downstream 2249942 3550039 ~ 3550487 (+) True G935846

Expression Profile