RNA id: TU1065127


Basic Information

Item Value
RNA id TU1065127
length 1143
lncRNA type inter_gene
GC content 0.48
exon number 2
gene id G934194
representative False

Chromosome Information

Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 1317633 ~ 1324592 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CTAGAAAAGATAAAAACAGCACCATTTTCGATCCGGGTAAAAGGAACACCCCCCTAGTAACCCTACCTGCAACTACCCCTCAATAAAGAAACAAGGTTCAAGCCCTCTAACACCACAAAAAGACCAAAAAACCACGGCCACAACTTCTCCCTACACATCGCACCTTACTACATATGAGTAAACGTGACTCTACAAAAATCGGAGGAAAAAATAACTCAACCACATTCAAAGAGCTATTAACCAGACCTATGGGTCACCTAGAACCCCAACTAAAAATTCTACAGGAACCCACAGATGTccactctatcctctacctttcCTGGACCCACAGAACCTCACCTTCGGGTATTTCCAACCCCAACCCCCCTACCAGAGCAGACCGCTCCCAACgctaacacacaagtcaatggtGACACAAAGGTCAAACACACACTTTTTACAGGAGGATCTAACATACTTCTACAAATCACAGGAACTCCACGTATGGCTCCTCTTGACCCCTAGGACTTCTAGTCTTACTTAAAATTACTTAACTTACCACAACCCAaacagcaccccaaaagcaaagtgTCTACTTCTCCTATACAATTCCCCATTGGAATCAACGACGGAGGCCTTTCCATCACATAACAGACTACTAGGCGCCTCTCCCCAAAAACCAAGCGATCTCATTGGACAAGCCACGGCCGTTCCTCTCACATGAACACCGCATGCACACCTCATGCACCAATCGGATTGACACCTGGCAAAACCACACCCCCCTCATTCCCTATAAAAGAGGAGCATCCCTCAGCCTCAGTACCATTCTGCCTGAACATCTTTTGAAGACACTTCACCTGGAGAAGACACAAGCTGGACCTCTACCAAAGAACTGCACCCAAGATGACTACTCCAACTGAAAGACCAGAACCCAGCTCCATGCTACACCATGGATACACCTCACCTGGACCAAGCCGCCAGCTGGTACTCCACACTCCCCACGAATATCCTTCTACTCCTTTTGAACAAAAGGCCCCTAAATAGCTTCATGCTACACCCCGAATCTGGACCACTCCGAGCCGCTTTTAAATCCTTGCGATTCCTCCCCTAATCTAGGTACTCCTACACCACGGAACCCACCTCCCAGAGAATCAACGCCCTTTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1065092 lncRNA upstream 17536 1299741 ~ 1300097 (+) True G934166
TU1064970 lncRNA upstream 167730 1149635 ~ 1149903 (+) True G934052
TU1064963 lncRNA upstream 172899 1144458 ~ 1144734 (+) True G934046
TU1064962 lncRNA upstream 175010 1142405 ~ 1142623 (+) True G934045
TU1064960 lncRNA upstream 185828 1131574 ~ 1131805 (+) True G934043
TU1065152 lncRNA downstream 38777 1363369 ~ 1367301 (+) True G934219
TU1065189 lncRNA downstream 162331 1486923 ~ 1489972 (+) True G934254
TU1065193 lncRNA downstream 166502 1491094 ~ 1496014 (+) True G934256
TU1065367 lncRNA downstream 281536 1606128 ~ 1606418 (+) True G934395
TU1065368 lncRNA downstream 282525 1607117 ~ 1607345 (+) True G934396
XM_036934648.1 mRNA upstream 458102 742492 ~ 859531 (+) False LOC110535150
XM_036934649.1 mRNA upstream 458102 742492 ~ 859531 (+) False LOC110535150
XM_036934650.1 mRNA upstream 458102 742492 ~ 859531 (+) False LOC110535150
XM_036934651.1 mRNA upstream 458102 829488 ~ 859531 (+) True LOC110535150
XM_021620012.2 mRNA upstream 670672 632123 ~ 646961 (+) True LOC110535151
XM_021620025.2 mRNA downstream 28397 1352989 ~ 1364272 (+) True fam162a
XM_036934654.1 mRNA downstream 64781 1389373 ~ 1479628 (+) False nktr
XM_036934656.1 mRNA downstream 64782 1389374 ~ 1479628 (+) False nktr
XM_036934655.1 mRNA downstream 65271 1389863 ~ 1479628 (+) False nktr
XM_036934657.1 mRNA downstream 100903 1425495 ~ 1479628 (+) True nktr
TU1065095 other upstream 9874 1307527 ~ 1307759 (+) True G934169
TU1064658 other upstream 366049 949531 ~ 951584 (+) True G933799
TU1064476 other upstream 589428 725187 ~ 728205 (+) True G933679
TU1064355 other upstream 713464 596323 ~ 604169 (+) True LOC110536523
TU1064302 other upstream 754974 561653 ~ 562659 (+) False G933532
TU1065194 other downstream 163484 1488076 ~ 1496014 (+) False G934256
TU1065592 other downstream 502035 1826627 ~ 1827366 (+) True G934579
TU1065679 other downstream 584068 1908660 ~ 1909080 (+) True G934640
TU1067186 other downstream 2225447 3550039 ~ 3550487 (+) True G935846
TU1067342 other downstream 2656179 3980771 ~ 3981151 (+) True G935976

Expression Profile