RNA id: TU1065152


Basic Information

Item Value
RNA id TU1065152
length 497
lncRNA type sense_over
GC content 0.52
exon number 2
gene id G934219
representative True

Chromosome Information

Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 1363369 ~ 1367301 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gccaccgtgcttctacacctgcattgcttgctgtttggggttttaggctgggtttctgtacagcactttgagatatcagctgatgtacgaagggctatataaacacatttgatttgatgtcggCTCAAGCATAAATTGTCTGCTATAATGCGCCTGGAATTGAATCCCGGCAATCGTTTCGCtgccccaggtgtgtgtgtgtgtgtgtgtggcctccacctgcctgtatgacctccctacaacgcctgggcatgctcctgatgaggtggcggatggtctcctgagggatctcctcccagacctggactaaagcatctgacaactcctggacagtctggtgcaacgtggcattggtggatggagcgagacatgtctcagatgtgctcaattggattcagttctggggaacgggtgggccagtccatagcatcaatgccttcctcttgcaggaactgctgacacactcctgccacatgaggtctagcattgtcttgcat

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1065119 lncRNA upstream 36741 1320225 ~ 1326628 (+) True G934193
TU1065127 lncRNA upstream 38777 1317633 ~ 1324592 (+) False G934194
TU1065123 lncRNA upstream 38777 1318164 ~ 1324592 (+) True G934194
TU1065092 lncRNA upstream 63272 1299741 ~ 1300097 (+) True G934166
TU1064970 lncRNA upstream 213466 1149635 ~ 1149903 (+) True G934052
TU1065189 lncRNA downstream 119622 1486923 ~ 1489972 (+) True G934254
TU1065193 lncRNA downstream 123793 1491094 ~ 1496014 (+) True G934256
TU1065367 lncRNA downstream 238827 1606128 ~ 1606418 (+) True G934395
TU1065368 lncRNA downstream 239816 1607117 ~ 1607345 (+) True G934396
TU1065389 lncRNA downstream 254881 1622182 ~ 1622412 (+) True G934417
XM_036934648.1 mRNA upstream 503838 742492 ~ 859531 (+) False LOC110535150
XM_036934649.1 mRNA upstream 503838 742492 ~ 859531 (+) False LOC110535150
XM_036934650.1 mRNA upstream 503838 742492 ~ 859531 (+) False LOC110535150
XM_036934651.1 mRNA upstream 503838 829488 ~ 859531 (+) True LOC110535150
XM_021620012.2 mRNA upstream 716408 632123 ~ 646961 (+) True LOC110535151
XM_036934654.1 mRNA downstream 22072 1389373 ~ 1479628 (+) False nktr
XM_036934656.1 mRNA downstream 22073 1389374 ~ 1479628 (+) False nktr
XM_036934655.1 mRNA downstream 22562 1389863 ~ 1479628 (+) False nktr
XM_036934657.1 mRNA downstream 58194 1425495 ~ 1479628 (+) True nktr
XM_021620030.2 mRNA downstream 475863 1843164 ~ 1855569 (+) False LOC110535167
TU1065095 other upstream 55610 1307527 ~ 1307759 (+) True G934169
TU1064658 other upstream 411785 949531 ~ 951584 (+) True G933799
TU1064476 other upstream 635164 725187 ~ 728205 (+) True G933679
TU1064355 other upstream 759200 596323 ~ 604169 (+) True LOC110536523
TU1064300 other upstream 800710 562014 ~ 562659 (+) True G933532
TU1065194 other downstream 120775 1488076 ~ 1496014 (+) False G934256
TU1065592 other downstream 459326 1826627 ~ 1827366 (+) True G934579
TU1065679 other downstream 541359 1908660 ~ 1909080 (+) True G934640
TU1067186 other downstream 2182738 3550039 ~ 3550487 (+) True G935846
TU1067342 other downstream 2613470 3980771 ~ 3981151 (+) True G935976

Expression Profile