RNA id: TU1065442


Basic Information

Item Value
RNA id TU1065442
length 242
lncRNA type inter_gene
GC content 0.48
exon number 1
gene id G934469
representative True

Chromosome Information

Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 1695921 ~ 1696162 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CCCATTCTCCCacagtcagttagttctctatccaactggcctgttctggtctgttctccatctgtcagttagttctctatccaactggcctgttctggcCTGTTTTCAttcagtcagttagttctctatccaactggcctgttctggtctgttctccctctgtcagttagttctctatccaactggcctgttctccctctgtcagttagttctctatccaactggcctgttctctctgtcag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1065435 lncRNA upstream 7329 1687982 ~ 1688592 (+) True G934462
TU1065412 lncRNA upstream 56099 1639589 ~ 1639822 (+) True G934440
TU1065389 lncRNA upstream 73509 1622182 ~ 1622412 (+) True G934417
TU1065368 lncRNA upstream 88576 1607117 ~ 1607345 (+) True G934396
TU1065367 lncRNA upstream 89503 1606128 ~ 1606418 (+) True G934395
TU1065444 lncRNA downstream 3578 1699740 ~ 1699957 (+) True G934471
TU1065450 lncRNA downstream 11382 1707544 ~ 1707853 (+) True G934477
TU1065451 lncRNA downstream 11742 1707904 ~ 1708239 (+) True G934478
TU1065453 lncRNA downstream 14788 1710950 ~ 1711231 (+) True G934480
TU1065472 lncRNA downstream 31475 1727637 ~ 1728091 (+) True G934498
XM_036934654.1 mRNA upstream 216293 1389373 ~ 1479628 (+) False nktr
XM_036934656.1 mRNA upstream 216293 1389374 ~ 1479628 (+) False nktr
XM_036934655.1 mRNA upstream 216293 1389863 ~ 1479628 (+) False nktr
XM_036934657.1 mRNA upstream 216293 1425495 ~ 1479628 (+) True nktr
XM_021620025.2 mRNA upstream 331649 1352989 ~ 1364272 (+) True fam162a
XM_021620030.2 mRNA downstream 147002 1843164 ~ 1855569 (+) False LOC110535167
XM_036934658.1 mRNA downstream 680539 2376701 ~ 2387592 (+) True si:ch73-206p6.1
XM_036934660.1 mRNA downstream 723177 2419339 ~ 2529660 (+) False plod2
XM_036934659.1 mRNA downstream 723184 2419346 ~ 2530974 (+) False plod2
XM_036934661.1 mRNA downstream 723184 2419346 ~ 2530974 (+) False plod2
TU1065194 other upstream 199907 1488076 ~ 1496014 (+) False G934256
TU1065095 other upstream 388162 1307527 ~ 1307759 (+) True G934169
TU1064658 other upstream 744337 949531 ~ 951584 (+) True G933799
TU1064476 other upstream 967716 725187 ~ 728205 (+) True G933679
TU1064355 other upstream 1091752 596323 ~ 604169 (+) True LOC110536523
TU1065592 other downstream 130465 1826627 ~ 1827366 (+) True G934579
TU1065679 other downstream 212498 1908660 ~ 1909080 (+) True G934640
TU1067186 other downstream 1853877 3550039 ~ 3550487 (+) True G935846
TU1067342 other downstream 2284609 3980771 ~ 3981151 (+) True G935976
TU1067343 other downstream 2285689 3981851 ~ 3982198 (+) True G935977

Expression Profile