RNA id: TU1065577


Basic Information

Item Value
RNA id TU1065577
length 686
lncRNA type inter_gene
GC content 0.33
exon number 1
gene id G934566
representative True

Chromosome Information

Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 1810101 ~ 1810786 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GTTGTCTCCATATTTATgtattatggccattgaaataCTAGCTATTAAAATTAGATCTAACAAGAACATCAAGGGGTTAGAAATACAGGGGATAAAAACAAAAATGATCGATGTGGGTTGATGTCTCTAGTCCACattctggatccctgcacagtctcattgAACATCTTGATAATTTTTCTAGTCTCTCTGGACTTAAACCTAATTATGACAAGTGTACCACATTACGTATTGGATCGTTAAAAAATACAATGTTTACACTaccttgtagtttaccaataaaatgggtggatggtgaagtagacatacttggtactcacatctcaaaaaatataaattaacTTACCGCAATTCATTTCTTTAGAAAGTTAGCAAAAGTAGATAAGATTCTGCAAACATTGAGAGGTAAATACTTGTATATTCATGGTAAAACCACATTGATTAAAAACTTATTTGGGATCGGTGTCCTTTCCACGGCACACTTGATTAAACgtaggttgtaagtaacaagaatatttcacaggacatagacatatctgctATTGGCAGAAAGTtttaattattgttaatctaactgcactgtccaatttacattaGCTATTGCAGTGAAAGAATGCTgttctattgtttgaggagagtgcaccattttcaacatgaaaagttattaataaacaaattaggcatat

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1065553 lncRNA upstream 27444 1781600 ~ 1782657 (+) True G934546
TU1065536 lncRNA upstream 38374 1769379 ~ 1771727 (+) True G934532
TU1065472 lncRNA upstream 82010 1727637 ~ 1728091 (+) True G934498
TU1065453 lncRNA upstream 98870 1710950 ~ 1711231 (+) True G934480
TU1065451 lncRNA upstream 101862 1707904 ~ 1708239 (+) True G934478
TU1065578 lncRNA downstream 220 1811006 ~ 1811312 (+) True G934567
TU1065581 lncRNA downstream 4421 1815207 ~ 1815422 (+) True G934570
TU1065588 lncRNA downstream 14067 1824853 ~ 1825114 (+) True G934576
TU1065589 lncRNA downstream 14522 1825308 ~ 1825509 (+) True G934577
TU1065590 lncRNA downstream 14779 1825565 ~ 1825822 (+) True G934578
XM_036934654.1 mRNA upstream 330473 1389373 ~ 1479628 (+) False nktr
XM_036934656.1 mRNA upstream 330473 1389374 ~ 1479628 (+) False nktr
XM_036934655.1 mRNA upstream 330473 1389863 ~ 1479628 (+) False nktr
XM_036934657.1 mRNA upstream 330473 1425495 ~ 1479628 (+) True nktr
XM_021620025.2 mRNA upstream 445829 1352989 ~ 1364272 (+) True fam162a
XM_021620030.2 mRNA downstream 32378 1843164 ~ 1855569 (+) False LOC110535167
XM_036934658.1 mRNA downstream 565915 2376701 ~ 2387592 (+) True si:ch73-206p6.1
XM_036934660.1 mRNA downstream 608553 2419339 ~ 2529660 (+) False plod2
XM_036934659.1 mRNA downstream 608560 2419346 ~ 2530974 (+) False plod2
XM_036934661.1 mRNA downstream 608560 2419346 ~ 2530974 (+) False plod2
TU1065194 other upstream 314087 1488076 ~ 1496014 (+) False G934256
TU1065095 other upstream 502342 1307527 ~ 1307759 (+) True G934169
TU1064658 other upstream 858517 949531 ~ 951584 (+) True G933799
TU1064476 other upstream 1081896 725187 ~ 728205 (+) True G933679
TU1064355 other upstream 1205932 596323 ~ 604169 (+) True LOC110536523
TU1065592 other downstream 15841 1826627 ~ 1827366 (+) True G934579
TU1065679 other downstream 97874 1908660 ~ 1909080 (+) True G934640
TU1067186 other downstream 1739253 3550039 ~ 3550487 (+) True G935846
TU1067342 other downstream 2169985 3980771 ~ 3981151 (+) True G935976
TU1067343 other downstream 2171065 3981851 ~ 3982198 (+) True G935977

Expression Profile