RNA id: TU1065578


Basic Information

Item Value
RNA id TU1065578
length 307
lncRNA type inter_gene
GC content 0.35
exon number 1
gene id G934567
representative True

Chromosome Information

Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 1811006 ~ 1811312 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ctattgtgttatattctcctgcattcctatcacatttaaaaaaacgtcagtgtttcctttcaaatgataccaagactatgcatgtccttgcttcaggtcctgagctacaggcagttagatttgggtatgtcattttaggagaaaattgaaaaaaaggccAGATCCTTAAGAGTTTTAACTCTTTggcctatcacagtttacttacttaccaATGGCACTGCCTACTCCAGATTACTCGTTTTTTAAATCCTATGAGCAAAAAAAGATTTCCTTTTATTAGGAATGCTAATCCAGACAAAATTAAATG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1065577 lncRNA upstream 220 1810101 ~ 1810786 (+) True G934566
TU1065553 lncRNA upstream 28349 1781600 ~ 1782657 (+) True G934546
TU1065536 lncRNA upstream 39279 1769379 ~ 1771727 (+) True G934532
TU1065472 lncRNA upstream 82915 1727637 ~ 1728091 (+) True G934498
TU1065453 lncRNA upstream 99775 1710950 ~ 1711231 (+) True G934480
TU1065581 lncRNA downstream 3895 1815207 ~ 1815422 (+) True G934570
TU1065588 lncRNA downstream 13541 1824853 ~ 1825114 (+) True G934576
TU1065589 lncRNA downstream 13996 1825308 ~ 1825509 (+) True G934577
TU1065590 lncRNA downstream 14253 1825565 ~ 1825822 (+) True G934578
TU1065597 lncRNA downstream 17687 1828999 ~ 1829270 (+) True G934581
XM_036934654.1 mRNA upstream 331378 1389373 ~ 1479628 (+) False nktr
XM_036934656.1 mRNA upstream 331378 1389374 ~ 1479628 (+) False nktr
XM_036934655.1 mRNA upstream 331378 1389863 ~ 1479628 (+) False nktr
XM_036934657.1 mRNA upstream 331378 1425495 ~ 1479628 (+) True nktr
XM_021620025.2 mRNA upstream 446734 1352989 ~ 1364272 (+) True fam162a
XM_021620030.2 mRNA downstream 31852 1843164 ~ 1855569 (+) False LOC110535167
XM_036934658.1 mRNA downstream 565389 2376701 ~ 2387592 (+) True si:ch73-206p6.1
XM_036934660.1 mRNA downstream 608027 2419339 ~ 2529660 (+) False plod2
XM_036934659.1 mRNA downstream 608034 2419346 ~ 2530974 (+) False plod2
XM_036934661.1 mRNA downstream 608034 2419346 ~ 2530974 (+) False plod2
TU1065194 other upstream 314992 1488076 ~ 1496014 (+) False G934256
TU1065095 other upstream 503247 1307527 ~ 1307759 (+) True G934169
TU1064658 other upstream 859422 949531 ~ 951584 (+) True G933799
TU1064476 other upstream 1082801 725187 ~ 728205 (+) True G933679
TU1064355 other upstream 1206837 596323 ~ 604169 (+) True LOC110536523
TU1065592 other downstream 15315 1826627 ~ 1827366 (+) True G934579
TU1065679 other downstream 97348 1908660 ~ 1909080 (+) True G934640
TU1067186 other downstream 1738727 3550039 ~ 3550487 (+) True G935846
TU1067342 other downstream 2169459 3980771 ~ 3981151 (+) True G935976
TU1067343 other downstream 2170539 3981851 ~ 3982198 (+) True G935977

Expression Profile