RNA id: TU1065590


Basic Information

Item Value
RNA id TU1065590
length 258
lncRNA type inter_gene
GC content 0.37
exon number 1
gene id G934578
representative True

Chromosome Information

Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 1825565 ~ 1825822 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GTTCGATGTCAAATGTTAACAAATTATGGAAATGTATGTCCAAACATCAATATTCAAATACATTGAAAATAATGGGTTTTCAGGTAGTGTAGGCTATAGTGCAATGTCACTCAATGTCGCGCAATATCGCTAACATTTTAAATGATCCAGGTTCTTCCACCATGGATCCCACATGTTCAGACATAACAAATGATCCATGTTCTTCCACCATGGATCCCACATGTTCAGACTTAACAAATTATCCATGTTCTTCCACCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1065589 lncRNA upstream 56 1825308 ~ 1825509 (+) True G934577
TU1065588 lncRNA upstream 451 1824853 ~ 1825114 (+) True G934576
TU1065581 lncRNA upstream 10143 1815207 ~ 1815422 (+) True G934570
TU1065578 lncRNA upstream 14253 1811006 ~ 1811312 (+) True G934567
TU1065577 lncRNA upstream 14779 1810101 ~ 1810786 (+) True G934566
TU1065597 lncRNA downstream 3177 1828999 ~ 1829270 (+) True G934581
TU1065598 lncRNA downstream 3524 1829346 ~ 1829590 (+) True G934582
TU1065610 lncRNA downstream 13229 1839051 ~ 1855581 (+) False LOC110535167
TU1065611 lncRNA downstream 13229 1839051 ~ 1855581 (+) False LOC110535167
TU1065613 lncRNA downstream 13229 1839051 ~ 1855581 (+) True LOC110535167
XM_036934654.1 mRNA upstream 345937 1389373 ~ 1479628 (+) False nktr
XM_036934656.1 mRNA upstream 345937 1389374 ~ 1479628 (+) False nktr
XM_036934655.1 mRNA upstream 345937 1389863 ~ 1479628 (+) False nktr
XM_036934657.1 mRNA upstream 345937 1425495 ~ 1479628 (+) True nktr
XM_021620025.2 mRNA upstream 461293 1352989 ~ 1364272 (+) True fam162a
XM_021620030.2 mRNA downstream 17342 1843164 ~ 1855569 (+) False LOC110535167
XM_036934658.1 mRNA downstream 550879 2376701 ~ 2387592 (+) True si:ch73-206p6.1
XM_036934660.1 mRNA downstream 593517 2419339 ~ 2529660 (+) False plod2
XM_036934659.1 mRNA downstream 593524 2419346 ~ 2530974 (+) False plod2
XM_036934661.1 mRNA downstream 593524 2419346 ~ 2530974 (+) False plod2
TU1065194 other upstream 329551 1488076 ~ 1496014 (+) False G934256
TU1065095 other upstream 517806 1307527 ~ 1307759 (+) True G934169
TU1064658 other upstream 873981 949531 ~ 951584 (+) True G933799
TU1064476 other upstream 1097360 725187 ~ 728205 (+) True G933679
TU1064355 other upstream 1221396 596323 ~ 604169 (+) True LOC110536523
TU1065592 other downstream 805 1826627 ~ 1827366 (+) True G934579
TU1065679 other downstream 82838 1908660 ~ 1909080 (+) True G934640
TU1067186 other downstream 1724217 3550039 ~ 3550487 (+) True G935846
TU1067342 other downstream 2154949 3980771 ~ 3981151 (+) True G935976
TU1067343 other downstream 2156029 3981851 ~ 3982198 (+) True G935977

Expression Profile