RNA id: TU1065598


Basic Information

Item Value
RNA id TU1065598
length 245
lncRNA type inter_gene
GC content 0.38
exon number 1
gene id G934582
representative True

Chromosome Information

Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 1829346 ~ 1829590 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GCTCAACCAGGCGGTTGGTACGTCAGTAAATAATAGTACAGTAGACTAAGAATAGGGTAGCctacatttatttattatttaaaaaatactgaTTTTGGGGGAAAATATGAATGAATTGTTAACAACACAGAATATTTAAAGGGGAAATCAgtagtagaaacaataacaaagtccaCCCCCACCCATGGGTTAGTAAAAAGGAATGGGGCAGGATAGACAGaggtatggatgcaaggactggccat

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1065597 lncRNA upstream 76 1828999 ~ 1829270 (+) True G934581
TU1065590 lncRNA upstream 3524 1825565 ~ 1825822 (+) True G934578
TU1065589 lncRNA upstream 3837 1825308 ~ 1825509 (+) True G934577
TU1065588 lncRNA upstream 4232 1824853 ~ 1825114 (+) True G934576
TU1065581 lncRNA upstream 13924 1815207 ~ 1815422 (+) True G934570
TU1065610 lncRNA downstream 9461 1839051 ~ 1855581 (+) False LOC110535167
TU1065611 lncRNA downstream 9461 1839051 ~ 1855581 (+) False LOC110535167
TU1065613 lncRNA downstream 9461 1839051 ~ 1855581 (+) True LOC110535167
TU1065652 lncRNA downstream 44524 1874114 ~ 1874381 (+) True G934614
TU1065665 lncRNA downstream 59689 1889279 ~ 1889512 (+) True G934627
XM_036934654.1 mRNA upstream 349718 1389373 ~ 1479628 (+) False nktr
XM_036934656.1 mRNA upstream 349718 1389374 ~ 1479628 (+) False nktr
XM_036934655.1 mRNA upstream 349718 1389863 ~ 1479628 (+) False nktr
XM_036934657.1 mRNA upstream 349718 1425495 ~ 1479628 (+) True nktr
XM_021620025.2 mRNA upstream 465074 1352989 ~ 1364272 (+) True fam162a
XM_021620030.2 mRNA downstream 13574 1843164 ~ 1855569 (+) False LOC110535167
XM_036934658.1 mRNA downstream 547111 2376701 ~ 2387592 (+) True si:ch73-206p6.1
XM_036934660.1 mRNA downstream 589749 2419339 ~ 2529660 (+) False plod2
XM_036934659.1 mRNA downstream 589756 2419346 ~ 2530974 (+) False plod2
XM_036934661.1 mRNA downstream 589756 2419346 ~ 2530974 (+) False plod2
TU1065592 other upstream 1980 1826627 ~ 1827366 (+) True G934579
TU1065194 other upstream 333332 1488076 ~ 1496014 (+) False G934256
TU1065095 other upstream 521587 1307527 ~ 1307759 (+) True G934169
TU1064658 other upstream 877762 949531 ~ 951584 (+) True G933799
TU1064476 other upstream 1101141 725187 ~ 728205 (+) True G933679
TU1065679 other downstream 79070 1908660 ~ 1909080 (+) True G934640
TU1067186 other downstream 1720449 3550039 ~ 3550487 (+) True G935846
TU1067342 other downstream 2151181 3980771 ~ 3981151 (+) True G935976
TU1067343 other downstream 2152261 3981851 ~ 3982198 (+) True G935977
TU1068725 other downstream 3190315 5019905 ~ 5021613 (+) False G937051

Expression Profile