RNA id: TCONS_00039036


Basic Information

Item Value
RNA id TCONS_00039036
length 4759
lncRNA type inter_gene
GC content 0.35
exon number 2
gene id XLOC_019838
representative True

Chromosome Information

Item Value
chromosome id NC_007132.7
NCBI id CM002905.2
chromosome length 45934066
location 42043974 ~ 42048805 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

tatgagaCAATTGAATAAgacattaaatttaatatttataatttattaggaaatgaaaaaattcTGCTTTAATAGAAAACTATGACTGTAACAACGGAACTTGCAACCTTGTCTAACTtaagttggctaacgatggttttcggaaacgcacccctggctgGGTAATCACTTATGTGCTGCTACTCGCTAGCATCACTGCAGTGTGAGCAAATAAGAGTAGATCAAAAGTAGTGCCTTGTATATATTTGCAAGTCGAAGGGGTGCTTTCTTAGAAAGCGCTcttcttgtttgttttaattagacGGGCAACCTTTCAAAAATATCACTGAGGGAAAGTATCAGCCACACTGCCTTTTTGTCTCACATGCCATAGTGAAAATATAACCATACTCCATTACAGACATGTTTGTCACTGCTTGTTAATGAAAACTAAAAGAAAACATGTCTAGGTATTAGCCATGTACGTGAATACACTGTtcaacatttaaaacaaacaaaaaaaagaagaaacatgTCTTGTAGTGCTATAACAATGCCaaaattttttatgtttgtggcaTGTCAGTTGCTCAAGCACCTATTGAAAAGAAACCAAACTTATAAAGGATTAACGTCTCTATTTTTGGACTgagagaaaaaacaaaagttcTCTGAAACGAGGAACTTTGACATTATCATACTTTACTTTGATGTAGCAATATAGATTAGCAAGGGCTTTTATGTGGTCGAAATGATAAAAGGCACACCGTTATGATCGATTTGAGTTGCAATTGACATGTTTATGTGTATCTAAAATGTAAGAAACTCCTCTGTTTGGTCAGTTTATGTctctaaaatgctttttttctttcatttttttaaaatgatgtacacaatttttaaatttgtatgttttttggaGGGTATGCGCAACTGGAAGGAGAAGGATATCAGTGTAACGTTACCCAATTTATTTTATTCGATGACCTTGACAAAGACCTTTTTGATAGTATGAGTTTGTGCCAGATGGAGTAAAGACTGACGGTTTACTCTGGGATATGTGTgaaaaccaacgcaatctcacagcaattcgtaacttttaaagttagtggctaattcgtattgtTTTGTACGATTTCATTCGTACATTTCAGTAGGATATGCTCATGCCCCAGTGAGGGTTAGGGGTGGGCttcacctccttttaaaaatcatacattttttaatgaaaatgtattttgtattaACTAGGGTTAAGAATGGGGTTTGTCGAcatgtctccttttaaaaaatcgtacaaaattgtatgaattagttCGAAGTAGGGTTAGGGATACGTGTGCGGTTTGTCGACATgtttccttttaaaaattgtatgaattagtacGAAGTAGGGTTAGGTGTGCGGTTTGTTAaaatgcctccttttaaaaatcgaaCAAAATCGTATGAATTAGTACGAAGTAGGGTAAGGGATAGGTGTTCGGTTTGTcgacatgcctccttttaaaaatcgaaTAAAATCGTATGAATTAGTTCGATGTAGGGTTAAGTGTGCGGTTTGTcgacatgcctccttttaaaaatcttacaaaaTTGTATGAGTTTATACGAAGTAGGGTTAGGTGTGTGGTTTGTcgacatgcctccttttaaaactcgtacaaaattgtatgagTTTATACGAAGTAGGGTTAGGTGTGTGGTTTGTcgacatgcctccttttaaaactCGAACAAAATCGTATGAATTAGTTCGAAGTAGGGTTAGGTGTGTGGTTTGTcgacatgcctccttttaaaaatctaacAAAATCGTATGAATTAGTTTGAAGTAGGGTTAGGTGTGTGGTTTGTcgacatgcctccttttaaaaatcgtacaaaattgtatgagTTTATATGAAGTAGGGTTAGGTGTGTGGTTTGTTGACAtgactccttttaaaaatcgaacaaaattgtatgaattagtacGAAGTAGGGTAAGGGATAGGTGTTCGGTTTGTCGACAtggctccttttaaaaatcatataaattagTACGAAGTAGGGTTAGGTGTGTGGTTTGTTGACctgcctctttttaaaaatcgGGGAAAATTGTATGAATTGGTGCGAAGTAGGGTTATAAATAGGTGTGCGGTTTGTTGACATGCCtacttttaaaattgtacattttcatagaAATTAATTTGTATGAATAAGGGTTAGTGGTAGGGTGTGTTGACATGCCTTCTTTTTAAGTTCGTACATCTTCACATGAATGAAATCCTATAGGTTTGTTTGAATTAGGGTTAAGTGTGTGGTTGGTTGACATGCCCCCTTTTTGAAATCGAACGTCTTCATATGAatgaaattgtatgaatttgttCGAATTAGGTTTAGAAGTGTGGGTTTGTTGACACttgtctttttaaaatcatgtgaatttgtacgaattagggTGAGGTGTGGTGTTTGTTGACATGCCTCCtttgtaaaaatgttacattttcatatgaaattataagaatttgtacgaattagggttaggagtggggtttattgacacgcctccttttaaaaattgtacaaaatCATAAGAATTTGTTCCAATTAGGGTTAGGATTAGGTGCGGGGTTTGTtgacatgcctcctttttaaaatcgtacatctTCCTATTAATGaaatcgtatgaatttgtacgaattagggTTGGGGGTGTGGGTTTGTTGAcacctctttttaaaaatcatacaaaattgtatgaatttgtaaaAATTAGGGGCTAGGTTTGGGGTTATATGACACAACTTTATAAAAACGACATTATCCAAATAatgaaattgtatgaatttgtacgaattagggTTATGTGTGGGGTTTGTTGACACACCTCCTCATGAAAATCGTGCaaaatcatatgaatttgtacgaattagggTTAGGCTCGGAGTTTGTTGACATGCCTCCTTATAAAAATCGCGCaaaatcatatgaatttgtacaaattagggTTAGGAGTGGGTTTTTTTTTGACAtgcttccttttaaaaatcgcgcaaaatcatacaaatttgtacgaattagggTTAGGCTTGGAGTTTGTTGACATGCCTCCTTATAAAAATCGCTCaaaatcatatgaatttgtacggaTTAGGGTTAGGCTTGGAGTTTGTTGACATGCCTCCTTATAAAAATCGCGCaaaatcatatgaatttgtacgaattagggTTAGGAGTGGTTTTTTTTGACAtgcttccttttaaaaatcgaGCAAAatcatacgaatttgtacgaattagggTTAGGTGTGGGGTTTGTTGACATGCTTCCTTTTGAAAATCGCGCaaaatcatatgaatttgtacgaattagggTTAGGCGTGGGGTTGGTTGACATGCTTCCTTTTAAAACTTGTTTCATTTGATTgaaatcatatgaatttgtacaaatagGGGTTAGGCATGgggtttttaaaaatcatacgttTTCAAATCGTAAGAATTTGTTTGAATTAGGTTTACGTGTTGGGTTTGTTGACACCCCATTTTCACAtgaatgaatttgtacgaattagccacttttctgacaacaCATACAATAGTTACGTTTCCCCGTGCGATTGTGTTGGTGAATACAGTATGCAAAGCACAGTCGTGGTTTCCTTTGGAGCCAGACTTGCGAATGCGGTAAAATATGTTCAGCTTAAAAAAATTGAGATTTCAGCTCAATATCTTGTATTGATGTTTAATATCATGTTAAACCAGTGACATACAGAGAGATTTACCCATGATGAGAACTTCTAAAGATGCAACATCTTATTTGTACCAACCTCTTGTTACGCATTTTGCACATTATaggcatatttaatatttatgtagtCAGCTTTGTGCTATGCAAGAATAGCTTGAACCATATTAATTAGCTCCTCACCCCTCCTCACTGTTGTTttcagtataaatatatatattgtacaaaGTCAGCGACAGAAACTGCGCACCCGTGGGACTGATGATGGGTGGCTCAGATTTGAAATAGTCCATTTCAAAGACATTGTAAAGCGGCAATAAGAAAAAGATGGATTAAAAAGAATAATTTAGTGTATTATGTCATGCACACAACAATGAATAGATACGTTTAGATTGTTCTGTTGCATCTAATACTATATTTTTGATGACCTGTGTTATGGATTAAGAATTTGtactttcatttgttttattatagcaTTTTATTTCAACAGATTGTGAAAGTGGTTTCATTTGGGGTTTCGCAATGGAGAAATCCATCACATACtgtaatttaaacaatatataaatatatatatatataaatatatttgtgctTGGAAAGGAGTAACTACTGACTTTAAAGGATGGGCGTGTGCAAACATGTTCATAGGCACAAACAGCTGTGTGCACAAGTCCAGAGGTCATGTATGATTTATTCTGTACTGTACACTGGGAAATGGCTAATGTCTTTGTAAAGGTATGCTTTCTTAATGTTATGGCCCTGTAGAATTTGATTCTCTTCATTAGTcatacaataaaagaaaaaagaaatctatatattttgtcatttttgaagCTATACATAATTATTGTTTAATCTTCATCTTTATTACAGTCATATTCACAGAAGTCTTCAGAAAATGTAAGACATTGGCTGCATctaaaatcgcctactactcaagTAGGTACATTTGGATTAGAATTTACTACacgaccattagaaaagtatatTCTGTATAGTATGAAGTGAGGAGTAATAAAAATCCAAAGTACTACATCCAC

Function

GO:

id name namespace
GO:0099643 signal release from synapse biological_process
GO:0050877 nervous system process biological_process
GO:0048488 synaptic vesicle endocytosis biological_process
GO:0009581 detection of external stimulus biological_process
GO:0009582 detection of abiotic stimulus biological_process
GO:0009583 detection of light stimulus biological_process
GO:0009584 detection of visible light biological_process
GO:0009314 response to radiation biological_process
GO:0007268 chemical synaptic transmission biological_process
GO:0045161 neuronal ion channel clustering biological_process
GO:0007269 neurotransmitter secretion biological_process
GO:0045162 clustering of voltage-gated sodium channels biological_process
GO:0001505 regulation of neurotransmitter levels biological_process
GO:0050953 sensory perception of light stimulus biological_process
GO:0009628 response to abiotic stimulus biological_process
GO:0098916 anterograde trans-synaptic signaling biological_process
GO:0002088 lens development in camera-type eye biological_process
GO:0104004 cellular response to environmental stimulus biological_process
GO:0007600 sensory perception biological_process
GO:0007601 visual perception biological_process
GO:0007602 phototransduction biological_process
GO:0042551 neuron maturation biological_process
GO:0009416 response to light stimulus biological_process
GO:0099536 synaptic signaling biological_process
GO:0099537 trans-synaptic signaling biological_process
GO:0036465 synaptic vesicle recycling biological_process
GO:0009449 gamma-aminobutyric acid biosynthetic process biological_process
GO:0003008 system process biological_process
GO:0051606 detection of stimulus biological_process
GO:0071214 cellular response to abiotic stimulus biological_process
GO:0018298 protein-chromophore linkage biological_process
GO:0071478 cellular response to radiation biological_process
GO:0071482 cellular response to light stimulus biological_process
GO:0140238 presynaptic endocytosis biological_process
GO:0006836 neurotransmitter transport biological_process
GO:0031226 intrinsic component of plasma membrane cellular_component
GO:0030672 synaptic vesicle membrane cellular_component
GO:0042995 cell projection cellular_component
GO:0001750 photoreceptor outer segment cellular_component
GO:0043005 neuron projection cellular_component
GO:0044441 obsolete ciliary part cellular_component
GO:0044456 obsolete synapse part cellular_component
GO:0044459 obsolete plasma membrane part cellular_component
GO:0044463 obsolete cell projection part cellular_component
GO:0120025 plasma membrane bounded cell projection cellular_component
GO:0120038 obsolete plasma membrane bounded cell projection part cellular_component
GO:0045202 synapse cellular_component
GO:0005886 plasma membrane cellular_component
GO:0005887 integral component of plasma membrane cellular_component
GO:0045211 postsynaptic membrane cellular_component
GO:0012506 vesicle membrane cellular_component
GO:0099501 exocytic vesicle membrane cellular_component
GO:0099503 secretory vesicle cellular_component
GO:0071944 cell periphery cellular_component
GO:0097458 obsolete neuron part cellular_component
GO:0070382 exocytic vesicle cellular_component
GO:0097730 non-motile cilium cellular_component
GO:0097731 9+0 non-motile cilium cellular_component
GO:0097733 photoreceptor cell cilium cellular_component
GO:0008021 synaptic vesicle cellular_component
GO:0098793 presynapse cellular_component
GO:0030658 transport vesicle membrane cellular_component
GO:0030659 cytoplasmic vesicle membrane cellular_component
GO:0019829 ATPase-coupled cation transmembrane transporter activity molecular_function
GO:0017075 syntaxin-1 binding molecular_function
GO:0022853 active ion transmembrane transporter activity molecular_function
GO:0009881 photoreceptor activity molecular_function
GO:0022890 inorganic cation transmembrane transporter activity molecular_function
GO:0000149 SNARE binding molecular_function
GO:0019905 syntaxin binding molecular_function
GO:0005212 structural constituent of eye lens molecular_function
GO:0004351 glutamate decarboxylase activity molecular_function
GO:0008020 G protein-coupled photoreceptor activity molecular_function
GO:0042625 ATPase-coupled ion transmembrane transporter activity molecular_function
GO:0008324 cation transmembrane transporter activity molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00039262 lncRNA downstream 450811 41590870 ~ 41593163 (-) True XLOC_019831
TCONS_00039008 lncRNA downstream 1019036 41021833 ~ 41024938 (-) False XLOC_019823
TCONS_00039690 lncRNA downstream 1511551 40528787 ~ 40532423 (-) False XLOC_019814
TCONS_00038988 lncRNA downstream 1659873 40377506 ~ 40384101 (-) True XLOC_019812
TCONS_00039689 lncRNA downstream 1793949 40249111 ~ 40250025 (-) False XLOC_019809
TCONS_00039691 lncRNA upstream 101555 42150360 ~ 42153664 (-) False XLOC_019840
TCONS_00039692 lncRNA upstream 101555 42150360 ~ 42156182 (-) False XLOC_019840
TCONS_00039693 lncRNA upstream 101555 42150360 ~ 42156184 (-) False XLOC_019840
TCONS_00039695 lncRNA upstream 101555 42150360 ~ 42156206 (-) False XLOC_019840
TCONS_00039694 lncRNA upstream 101555 42150360 ~ 42156206 (-) False XLOC_019840
TCONS_00039035 mRNA downstream 36492 41920127 ~ 42007482 (-) True XLOC_019837
TCONS_00039034 mRNA downstream 36761 41903760 ~ 42007213 (-) False XLOC_019837
TCONS_00039033 mRNA downstream 36761 41903760 ~ 42007213 (-) False XLOC_019837
TCONS_00039032 mRNA downstream 36761 41903760 ~ 42007213 (-) False XLOC_019837
TCONS_00039030 mRNA downstream 170390 41863620 ~ 41873584 (-) False XLOC_019836
TCONS_00039037 mRNA upstream 1546 42050351 ~ 42100471 (-) False XLOC_019839
TCONS_00039038 mRNA upstream 1557 42050362 ~ 42055872 (-) False XLOC_019839
TCONS_00039039 mRNA upstream 2081 42050886 ~ 42097736 (-) True XLOC_019839
TCONS_00039040 mRNA upstream 108144 42156949 ~ 42202792 (-) True XLOC_019841
TCONS_00039041 mRNA upstream 736711 42785516 ~ 42831033 (-) True XLOC_019842
TCONS_00039031 other downstream 170877 41863654 ~ 41873097 (-) True XLOC_019836
TCONS_00039016 other downstream 692309 41351545 ~ 41351665 (-) True XLOC_019828
TCONS_00039012 other downstream 792426 41251431 ~ 41251548 (-) True XLOC_019825
TCONS_00038990 other downstream 1632327 40403260 ~ 40411647 (-) True XLOC_019813
TCONS_00038972 other downstream 1962045 40077951 ~ 40081929 (-) True XLOC_019807
TCONS_00039061 other upstream 1341596 43390401 ~ 43393079 (-) True XLOC_019853
TCONS_00039085 other upstream 1706172 43754977 ~ 43801511 (-) True XLOC_019865
TCONS_00039098 other upstream 2519375 44568180 ~ 44568266 (-) True XLOC_019876
TCONS_00039112 other upstream 3148537 45197342 ~ 45209405 (-) False XLOC_019883

Expression Profile

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