RNA id: TU1065857


Basic Information

Item Value
RNA id TU1065857
length 2440
lncRNA type inter_gene
GC content 0.43
exon number 4
gene id G934785
representative False

Chromosome Information

Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 2030833 ~ 2106325 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

acagctagagaaaccagcctggtataatacagctagagaacccagcctggtataatatagctagagagaccagcctggtataatacagctagagagaccagcctggtataacacagctagagagaccagcgtggaataatacagctagagagacaagcctggtatgacacagctagagagaccagtctggtataatacatctagacctgcctggtataataaatctagagagaccaacctggtataatacatctagagagacgtgcctggtataatacatttagtccagcctggtataatacatctagagagaccagcctggtatattACATCTAGatcagcctggtataatacatcaaGAGAGTCCAGCCTGGTACAATaaatctagaccagcctggtattatacagctagagagaccagccagGTATAATTCAGCTAGAGAGAACACCCtgatataatacagctagagagaccagcttggtataatacatctagaccagcctggtataatacatctagagagaccagcctggtataatacagctagagagaccagcctggtataatacagctagagagaccagactggtgtaatacagctagagaaaccagcctggtataatacagctagagagaccagccttgtataatacatctagatagaccagcatggtataatacatctagagagaccagcctggtataattaatctagaccagcctggtataatacatctagagagccAAGCAGGTTATGATACACCTAGAGAGACcggcctggtataatacatctagacccgcctggtataatacagatagagagaacagcctggtataatacaactagaaagacctgcctggtataatacagctagagagaccagcctggtataatacagctagagagaccagcctggtatactacagctagagagacaagcCTGGTATGATACACCTAGAGAGACCAagctggtataatacatctagagaggcAAGCCTGGTATGATACAGCTTGTGAGAACAGCCTgctataatacatctagagagaccaacctggtataatacatatagagagacatgcctggtataatacatctagtccagcctggtataatacagctagagagaccagcctggtgtaatacatctagagagaccagcctggtgtaatacatctagagagaccagcctggtataatacatctagaccagcctggtgtaATAAAGCTAGAGAGACAAGACTCTTATACTACAACTAgacaagcctggtataatacagctagagagaccagcctggtataatacagctagagagaccagcctggtataacacagctagagagaccagcgtggaataatacagctagagagccAAGCCTGGTACGATACACCTAGAGAGACcggcctggtataatacatctagaaagacctgcctggtataatacagctagagagaccagcctggtataatacagctagagagaccagcatggtatgatagagctagagagaccagcctggtatactacagctagagagacaagcCTGGTGTAATaaatctagaccagcctggtataatacagctatagaccccagcctggtataatgcaattagagagaacagcctggtataatacatctagaaagacctgcctggtataatacagctagagagaccagcctggtataatacagctagagagaccagcctggtatactacagctagagagacaagcCTGGTGTAATaaatctagaccagcctggtataatacagctatagaccccagcctggtataatacatctagagagaacagcctggtataatacatctagaaagaccagcctggtataatacagctagagagaccagcctggtgtaataaaactagaccagcctgttataatacaactagagagaccagactggtacaatacagctagagagacctgcctggtataatacaactagaccagcctgttataatacaactagaaagaccaacctggtataatacatatagagagaccagcctggtataatacatctattccagcctggtgtaatacatctagagagaccagcctggtataatacagcaagagagaccaccctggtataatacatctattccagcctggtgtaatacatctagagagaccagcctggtataatacagcaagagagaccagcctggtataatacatctagaccagcccggtgtaatacagctagagagaccagactggtataaaacaactagaccagcctggtattatacagctagagagaccagcctggtataatacagctagagaaaccatcatggtataatacagctagagagatcagcctggtataatacatctagaccagcctggtattatacagctagagaaaccagcctggtataatacagctagagaaccCAGCCTGGTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1065880 lncRNA upstream 12390 2018137 ~ 2018443 (+) True G934789
TU1065848 lncRNA upstream 20729 2009755 ~ 2010104 (+) True G934777
TU1065834 lncRNA upstream 30699 1999784 ~ 2000134 (+) True G934763
TU1065830 lncRNA upstream 33888 1996718 ~ 1996945 (+) True G934759
TU1065826 lncRNA upstream 36011 1994072 ~ 1994822 (+) True G934755
TU1065887 lncRNA downstream 5688 2044230 ~ 2052331 (+) True G934795
TU1065868 lncRNA downstream 31354 2069896 ~ 2106325 (+) True G934785
TU1065878 lncRNA downstream 36895 2075437 ~ 2086551 (+) True G934787
TU1065897 lncRNA downstream 73200 2111742 ~ 2116878 (+) True G934804
TU1065903 lncRNA downstream 76893 2115435 ~ 2117609 (+) True G934810
XM_021620030.2 mRNA upstream 175264 1843164 ~ 1855569 (+) False LOC110535167
XM_036934654.1 mRNA upstream 551205 1389373 ~ 1479628 (+) False nktr
XM_036934658.1 mRNA downstream 338159 2376701 ~ 2387592 (+) True si:ch73-206p6.1
XM_036934660.1 mRNA downstream 380797 2419339 ~ 2529660 (+) False plod2
XM_036934659.1 mRNA downstream 380804 2419346 ~ 2530974 (+) False plod2
XM_036934661.1 mRNA downstream 380804 2419346 ~ 2530974 (+) False plod2
XR_005034533.1 mRNA downstream 1209284 3247826 ~ 3249391 (+) False LOC118937290
TU1065679 other upstream 121753 1908660 ~ 1909080 (+) True G934640
TU1065592 other upstream 203467 1826627 ~ 1827366 (+) True G934579
TU1065194 other upstream 534819 1488076 ~ 1496014 (+) False G934256
TU1065095 other upstream 723074 1307527 ~ 1307759 (+) True G934169
TU1064658 other upstream 1079249 949531 ~ 951584 (+) True G933799
TU1067186 other downstream 1511497 3550039 ~ 3550487 (+) True G935846
TU1067342 other downstream 1942229 3980771 ~ 3981151 (+) True G935976
TU1067343 other downstream 1943309 3981851 ~ 3982198 (+) True G935977
TU1068725 other downstream 2981363 5019905 ~ 5021613 (+) False G937051
TU1068724 other downstream 2981618 5020160 ~ 5028145 (+) True G937051

Expression Profile