RNA id: TU1065878


Basic Information

Item Value
RNA id TU1065878
length 2202
lncRNA type inter_gene
GC content 0.44
exon number 3
gene id G934787
representative True

Chromosome Information

Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 2075437 ~ 2086551 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ggtataatacagctagagagaccagcctggtacaatacagttagagataccagcctggattaatacagctagagagaccagcctggtaaaatacagctagagagaccagcctgttatTATACAACTAGAGAGATCAGCCTGgtacaatacagctagagagaccagcctggtataatacagctagagcgaccagcctggtataatacaggtagagagaccagcctggtttaatgaagctagagagaccagcctggtaaaatgcatctagaccagcctgttataatacagctagagcgaccagcctggtataataaagctagagagaccagcctggtttaataaagctagagaaaccagcctggttCAATAAAGatagagaaaccagcctggtataatacatctagaccagcctgttataatactactagaccagcctggtataataaaagctagagaaaccagcctggtataatacagttagagataccagcctgttataatacaactagagagatcagcctggtacaatacagctagaaagaccagcctggtataatacagctagagcgaccagcctggtataatacaggtagagagaccagcctggtattatacatctagaccagcctgttataatactactagaccagcctggtataatacagctagagaaaccaacctggtataatacagttagagataccagcctggattaatacagctagagagaccagcctggtaaaatacagctagagagaccagcctgttataatacaactagagagatcagcctggtacaatacagctagagagaccagcctggtataatacagctagagcgaCCAGCCTgccataatacatctagagagaccagcctggtataatacagctagagcgaccagccttgtataatacaggtagagagaccagcctggtttaatgaagctagagagaccagcctgttattatacatctagagagaccagcctgttataaaaCCACtacaccagcctggtataatacagctagagagaccagcctggtatagcacAGCTACAGAGACTAGCCTGGTATAATGTAGCTAGAGAGAAAAGCCTGGTGTAATAAatctagaccagtctggtatattacagctagagagaccagcctgtaataatacatctagaccagcctggtattatatatctagaccagcctggtataatacagctagagagaccagcctggtattatacatctagagagaccagcatggtataatacagctagagagaccagcctggtataatacatctagagagaccagcttggtataatacagctagagagaccagcctgttataatgcatctaaaccagcctggtataatacagctagagaaaccagcctggtataatacatctagaccagccgggtataatacatctagagacaccggcctggtataatacatctagaccagcctggtataatacatctagagagaccagccttgtataatacagctagaccagcctgttataatacagctagagagaccagcctggtataatacagctagagcaaccagcctggtataatatagcgagaccagcctggtttaatacagctagagagaccagcctggtaaaatgcatctagaccagcctggtataatacagctagagcgaccagcctggtataatacagctagagagaccagcctggtataataaatctagaccagtctggtataatacagctagagagaccagcctgaaataatacatctagaccagcctggtataatatatctggaccagcctggtataatacagctagagagacccgcctggtataataaagctagagagaccagcctggtataaaacggctagagagaccagcctgctatagcacagctacagagaacagcctggtataatacaggtagagagacgagcctggtataatgcatcgAGACCAGCtgggtataatacagctagagagaccagcctggtataatacatctagaccagcctggtataatacagctagatagaccagcctggtataatacagctagagagaccattctggtataatacatctagagagaccagcctggtataatacagctagagagaccagcctggtgtaatacagctagagagaccattctggtataatacatctagagagaccagcctggtataatacatc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1065887 lncRNA upstream 23106 2044230 ~ 2052331 (+) True G934795
TU1065857 lncRNA upstream 36895 2030833 ~ 2038542 (+) False G934785
TU1065880 lncRNA upstream 56994 2018137 ~ 2018443 (+) True G934789
TU1065848 lncRNA upstream 65333 2009755 ~ 2010104 (+) True G934777
TU1065834 lncRNA upstream 75303 1999784 ~ 2000134 (+) True G934763
TU1065897 lncRNA downstream 25191 2111742 ~ 2116878 (+) True G934804
TU1065903 lncRNA downstream 28884 2115435 ~ 2117609 (+) True G934810
TU1065904 lncRNA downstream 30609 2117160 ~ 2122561 (+) True G934811
TU1065905 lncRNA downstream 36082 2122633 ~ 2159184 (+) True G934812
TU1066021 lncRNA downstream 91543 2178094 ~ 2184435 (+) True G934883
XM_021620030.2 mRNA upstream 219868 1843164 ~ 1855569 (+) False LOC110535167
XM_036934654.1 mRNA upstream 595809 1389373 ~ 1479628 (+) False nktr
XM_036934658.1 mRNA downstream 290150 2376701 ~ 2387592 (+) True si:ch73-206p6.1
XM_036934660.1 mRNA downstream 332788 2419339 ~ 2529660 (+) False plod2
XM_036934659.1 mRNA downstream 332795 2419346 ~ 2530974 (+) False plod2
XM_036934661.1 mRNA downstream 332795 2419346 ~ 2530974 (+) False plod2
XR_005034533.1 mRNA downstream 1161275 3247826 ~ 3249391 (+) False LOC118937290
TU1065679 other upstream 166357 1908660 ~ 1909080 (+) True G934640
TU1065592 other upstream 248071 1826627 ~ 1827366 (+) True G934579
TU1065194 other upstream 579423 1488076 ~ 1496014 (+) False G934256
TU1065095 other upstream 767678 1307527 ~ 1307759 (+) True G934169
TU1064658 other upstream 1123853 949531 ~ 951584 (+) True G933799
TU1067186 other downstream 1463488 3550039 ~ 3550487 (+) True G935846
TU1067342 other downstream 1894220 3980771 ~ 3981151 (+) True G935976
TU1067343 other downstream 1895300 3981851 ~ 3982198 (+) True G935977
TU1068725 other downstream 2933354 5019905 ~ 5021613 (+) False G937051
TU1068724 other downstream 2933609 5020160 ~ 5028145 (+) True G937051

Expression Profile