RNA id: TU1065904


Basic Information

Item Value
RNA id TU1065904
length 1171
lncRNA type inter_gene
GC content 0.43
exon number 2
gene id G934811
representative True

Chromosome Information

Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 2117160 ~ 2122561 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

aatacagctagagacaccagcctggtataatacagGTATActgtccagcctggtataatacagttagagataccagcctagtgtaatacagctaaagagaccagcctggtataaaacagctagagagaccagccttttataatacaactagagagaccagactggtataatacagctagagagaccagcctgaaaTAATTcacctagagagaccagcctggtataatacatctagacctgcCTGTTAAATACATCTAGAAacgcctggtataatacagctagagagatcagcctggtataatacatctagacctgcCTGTTAAATACATCTAGAAACGCCTGGCATAAtgcatctagagagaccagcctggtataatacatctagaccagcctggtataatgcatctagacaagcctggtataatacagctagagagaccagcctggtataatacagctagatagaaaagcctggtataatacatctagacctgcCTGTTAAATACATCTAGAAacgcctggtataatacagctagagagatcagcctggtataatacatctagaccagcctggtatgatGCATCTAgacaagcctggtataatacagctatagagaccagcctggtataatacatccagaacagcctggtataatacagctagaaagaccagcctgatataatacagctagagcgaccagtctggtataatacagcgagaccagcctggtttaaaaaagctagagagaccagcctggtaaaatgcctctagaccagcctggtataatgcagctagagagaaaagcctggtataatacatttcgaccagcctggtataatacagctagagagaccagcctgaaataatacatctagaccagcctggtataatatatctggaccagcctggtataatacagctagagagaccagcctggtataatacagctagagagaccagcctggtataataaagctagagagaccagcttgGTATAAAGCAGCtagatagaccagcctggtataatgcatttcgaccagcctggtataatacagctagagagaccagcctgaaataatacatctagaccagcctgttataatactactacaccagcctggtataatacagctagagagaccagcctggtatagcacagctacagagacc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1065897 lncRNA upstream 282 2111742 ~ 2116878 (+) True G934804
TU1065868 lncRNA upstream 10835 2069896 ~ 2106325 (+) True G934785
TU1065878 lncRNA upstream 30609 2075437 ~ 2086551 (+) True G934787
TU1065887 lncRNA upstream 64829 2044230 ~ 2052331 (+) True G934795
TU1065857 lncRNA upstream 78618 2030833 ~ 2038542 (+) False G934785
TU1065905 lncRNA downstream 72 2122633 ~ 2159184 (+) True G934812
TU1066021 lncRNA downstream 55533 2178094 ~ 2184435 (+) True G934883
TU1066028 lncRNA downstream 67873 2190434 ~ 2190643 (+) True G934890
TU1066036 lncRNA downstream 74430 2196991 ~ 2197214 (+) True G934898
TU1066037 lncRNA downstream 74685 2197246 ~ 2197517 (+) True G934899
XM_021620030.2 mRNA upstream 261591 1843164 ~ 1855569 (+) False LOC110535167
XM_036934654.1 mRNA upstream 637532 1389373 ~ 1479628 (+) False nktr
XM_036934658.1 mRNA downstream 254140 2376701 ~ 2387592 (+) True si:ch73-206p6.1
XM_036934660.1 mRNA downstream 296778 2419339 ~ 2529660 (+) False plod2
XM_036934659.1 mRNA downstream 296785 2419346 ~ 2530974 (+) False plod2
XM_036934661.1 mRNA downstream 296785 2419346 ~ 2530974 (+) False plod2
XR_005034533.1 mRNA downstream 1125265 3247826 ~ 3249391 (+) False LOC118937290
TU1065679 other upstream 208080 1908660 ~ 1909080 (+) True G934640
TU1065592 other upstream 289794 1826627 ~ 1827366 (+) True G934579
TU1065194 other upstream 621146 1488076 ~ 1496014 (+) False G934256
TU1065095 other upstream 809401 1307527 ~ 1307759 (+) True G934169
TU1064658 other upstream 1165576 949531 ~ 951584 (+) True G933799
TU1067186 other downstream 1427478 3550039 ~ 3550487 (+) True G935846
TU1067342 other downstream 1858210 3980771 ~ 3981151 (+) True G935976
TU1067343 other downstream 1859290 3981851 ~ 3982198 (+) True G935977
TU1068725 other downstream 2897344 5019905 ~ 5021613 (+) False G937051
TU1068724 other downstream 2897599 5020160 ~ 5028145 (+) True G937051

Expression Profile