RNA id: TU1066028


Basic Information

Item Value
RNA id TU1066028
length 210
lncRNA type inter_gene
GC content 0.39
exon number 1
gene id G934890
representative True

Chromosome Information

Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 2190434 ~ 2190643 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

cctaacccattaaatgtaaccctaaccctaacccattaaatgtaaccctaaccccaacccattAAATGTAACCCTAAACCCGTAcatgtaaccctaacccattaaatgtaaccctaacccattaaatgtaaccatagcccattaaatgtaaccctaaccctaacccattaaatgtaaccctaacccattaaatgtaaccctaaccctaac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1066021 lncRNA upstream 5999 2178094 ~ 2184435 (+) True G934883
TU1065905 lncRNA upstream 31250 2122633 ~ 2159184 (+) True G934812
TU1065904 lncRNA upstream 67873 2117160 ~ 2122561 (+) True G934811
TU1065903 lncRNA upstream 72825 2115435 ~ 2117609 (+) True G934810
TU1065897 lncRNA upstream 73556 2111742 ~ 2116878 (+) True G934804
TU1066036 lncRNA downstream 6348 2196991 ~ 2197214 (+) True G934898
TU1066037 lncRNA downstream 6603 2197246 ~ 2197517 (+) True G934899
TU1066052 lncRNA downstream 25107 2215750 ~ 2216183 (+) True G934910
TU1066097 lncRNA downstream 57107 2247750 ~ 2248050 (+) True G934950
TU1066108 lncRNA downstream 68659 2259302 ~ 2259740 (+) True G934961
XM_021620030.2 mRNA upstream 334865 1843164 ~ 1855569 (+) False LOC110535167
XM_036934654.1 mRNA upstream 710806 1389373 ~ 1479628 (+) False nktr
XM_036934658.1 mRNA downstream 186058 2376701 ~ 2387592 (+) True si:ch73-206p6.1
XM_036934660.1 mRNA downstream 228696 2419339 ~ 2529660 (+) False plod2
XM_036934659.1 mRNA downstream 228703 2419346 ~ 2530974 (+) False plod2
XM_036934661.1 mRNA downstream 228703 2419346 ~ 2530974 (+) False plod2
XR_005034533.1 mRNA downstream 1057183 3247826 ~ 3249391 (+) False LOC118937290
TU1065679 other upstream 281354 1908660 ~ 1909080 (+) True G934640
TU1065592 other upstream 363068 1826627 ~ 1827366 (+) True G934579
TU1065194 other upstream 694420 1488076 ~ 1496014 (+) False G934256
TU1065095 other upstream 882675 1307527 ~ 1307759 (+) True G934169
TU1064658 other upstream 1238850 949531 ~ 951584 (+) True G933799
TU1067186 other downstream 1359396 3550039 ~ 3550487 (+) True G935846
TU1067342 other downstream 1790128 3980771 ~ 3981151 (+) True G935976
TU1067343 other downstream 1791208 3981851 ~ 3982198 (+) True G935977
TU1068725 other downstream 2829262 5019905 ~ 5021613 (+) False G937051
TU1068724 other downstream 2829517 5020160 ~ 5028145 (+) True G937051

Expression Profile