RNA id: TU1066171


Basic Information

Item Value
RNA id TU1066171
length 349
lncRNA type inter_gene
GC content 0.43
exon number 5
gene id G935021
representative False

Chromosome Information

Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 2328025 ~ 2335784 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

acaggagtgtagtgtagacaggtacaggagtgtagtgtagtgtagacatgtacaggagtgtagtgtagtgtagacaagaacaggagtgtagtgtagacaggtacagaagtgtagtgtagtgtagacatgtacaggagtgtagtgtagacatgtacaggagtgtagtgtagtgtagacatgtacaggagtgtagtgtagacatgtacaggagtgtagtgtagacatgaacaggagtgtagtgtagacatgtacaggagtgtagtgtagtgtagacatgaacaggagtgtagtgtagatatgtacaggagtgtagtgtagacatacacaggagtgtagtgtagtgtagaca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1066165 lncRNA upstream 3784 2324022 ~ 2324241 (+) True G935015
TU1066157 lncRNA upstream 9140 2318636 ~ 2318885 (+) True G935007
TU1066129 lncRNA upstream 43307 2284459 ~ 2284718 (+) True G934981
TU1066118 lncRNA upstream 56651 2270847 ~ 2271374 (+) True G934970
TU1066108 lncRNA upstream 68285 2259302 ~ 2259740 (+) True G934961
TU1066199 lncRNA downstream 19098 2354174 ~ 2357652 (+) True G935040
TU1066241 lncRNA downstream 115322 2450398 ~ 2450646 (+) True G935078
TU1066250 lncRNA downstream 133723 2468799 ~ 2470419 (+) True G935087
TU1066252 lncRNA downstream 135531 2470607 ~ 2471456 (+) True G935089
TU1066262 lncRNA downstream 178664 2513740 ~ 2514425 (+) True G935099
XM_021620030.2 mRNA upstream 472456 1843164 ~ 1855569 (+) False LOC110535167
XM_036934654.1 mRNA upstream 848397 1389373 ~ 1479628 (+) False nktr
XM_036934658.1 mRNA downstream 41625 2376701 ~ 2387592 (+) True si:ch73-206p6.1
XM_036934660.1 mRNA downstream 84263 2419339 ~ 2529660 (+) False plod2
XM_036934659.1 mRNA downstream 84270 2419346 ~ 2530974 (+) False plod2
XM_036934661.1 mRNA downstream 84270 2419346 ~ 2530974 (+) False plod2
XR_005034533.1 mRNA downstream 912750 3247826 ~ 3249391 (+) False LOC118937290
TU1065679 other upstream 418945 1908660 ~ 1909080 (+) True G934640
TU1065592 other upstream 500659 1826627 ~ 1827366 (+) True G934579
TU1065194 other upstream 832011 1488076 ~ 1496014 (+) False G934256
TU1065095 other upstream 1020266 1307527 ~ 1307759 (+) True G934169
TU1064658 other upstream 1376441 949531 ~ 951584 (+) True G933799
TU1067186 other downstream 1214963 3550039 ~ 3550487 (+) True G935846
TU1067342 other downstream 1645695 3980771 ~ 3981151 (+) True G935976
TU1067343 other downstream 1646775 3981851 ~ 3982198 (+) True G935977
TU1068725 other downstream 2684829 5019905 ~ 5021613 (+) False G937051
TU1068724 other downstream 2685084 5020160 ~ 5028145 (+) True G937051

Expression Profile