RNA id: TU1066262



Basic Information


Item Value
RNA id TU1066262
length 489
lncRNA type intronic
GC content 0.46
exon number 2
gene id G935099
representative True

Chromosome Information


Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 2513740 ~ 2514425 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


ctgtagtgagtgttgcaactgaggacagacaatttttacgtgctacacgcttcagcactctgcggtcccgttctttgagcttgtgtggcctaccacgtaGCAggtgagccgttgttgctcctagacatttccacttcacaataacagcacttacagttgaccggggcagctctagcagggcaaacatttgacaaactgacttgttgaaaaggtggcatcctatgacggtgccacgttgaaagtcactgagctcttcaataaagCCAttatactgtcaatgtttgtctatggagattgcatgtctgtcTGCTCAATTTTATGCAACTTTCAAcaacgggtgttgctgaaatagctgaatccactaatttgaaggggtgtccacatagtttgtgtatgtagtgtatcaGTCCGTGAGAGCTATAGTAACGGAGTATAGTCGCGGAGCTGCTATAGTCACGGAGCTGCTATAGTCACGGAGCTGCTATAGTC

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU1066252 lncRNA upstream 42284 2470607 ~ 2471456 (+) True G935089
TU1066250 lncRNA upstream 43321 2468799 ~ 2470419 (+) True G935087
TU1066241 lncRNA upstream 63094 2450398 ~ 2450646 (+) True G935078
TU1066199 lncRNA upstream 156088 2354174 ~ 2357652 (+) True G935040
TU1066173 lncRNA upstream 177956 2332057 ~ 2335784 (+) True G935021
TU1066214 lncRNA downstream 15780 2530205 ~ 2530949 (+) True plod2
TU1066389 lncRNA downstream 58308 2572733 ~ 2573076 (+) True G935196
TU1066412 lncRNA downstream 131158 2645583 ~ 2645824 (+) True G935219
TU1066415 lncRNA downstream 131598 2646023 ~ 2646251 (+) True G935221
TU1066425 lncRNA downstream 138757 2653182 ~ 2653387 (+) True G935231
XM_036934658.1 mRNA upstream 126148 2376701 ~ 2387592 (+) True si:ch73-206p6.1
XM_021620030.2 mRNA upstream 658171 1843164 ~ 1855569 (+) False LOC110535167
XM_036934656.1 mRNA upstream 1034112 1389374 ~ 1479628 (+) False nktr
XR_005034533.1 mRNA downstream 733401 3247826 ~ 3249391 (+) False LOC118937290
XR_005034785.1 mRNA downstream 887627 3402052 ~ 3402867 (+) True LOC118937434
XM_021620035.2 mRNA downstream 1009132 3523557 ~ 3616312 (+) False jph1a
XM_036934667.1 mRNA downstream 1009132 3523557 ~ 3616312 (+) True jph1a
XM_021620039.2 mRNA downstream 1119515 3633940 ~ 3636886 (+) True LOC110535177
TU1065679 other upstream 604660 1908660 ~ 1909080 (+) True G934640
TU1065592 other upstream 686374 1826627 ~ 1827366 (+) True G934579
TU1065194 other upstream 1017726 1488076 ~ 1496014 (+) False G934256
TU1065095 other upstream 1205981 1307527 ~ 1307759 (+) True G934169
TU1064658 other upstream 1562156 949531 ~ 951584 (+) True G933799
TU1067186 other downstream 1035614 3550039 ~ 3550487 (+) True G935846
TU1067342 other downstream 1466346 3980771 ~ 3981151 (+) True G935976
TU1067343 other downstream 1467426 3981851 ~ 3982198 (+) True G935977
TU1068725 other downstream 2505480 5019905 ~ 5021613 (+) False G937051
TU1068724 other downstream 2505735 5020160 ~ 5028145 (+) True G937051

Expression Profile