RNA id: TU1066438


Basic Information

Item Value
RNA id TU1066438
length 374
lncRNA type inter_gene
GC content 0.43
exon number 1
gene id G935244
representative True

Chromosome Information

Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 2663655 ~ 2664028 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GAAGTGATAGAGGAGAACAGAACCATAACATCAACAGGCTGAGGCAGGAAgtgacagaggagaacagaaccaTAACATTAACAGGCTGAGGCAGGAAgtgacagaagagaacagaaccaTAACATTAACAGACTGAGGCAGGAAGTGACAGAAGAGAACCATAACATTagaatcataaaacacgggacgagatgttaaaaactgtccattgtgccaatagatggaatgcactcacatgagatttgccgtgatgttgaTAGAGTGAcatgggaggtttatttcttagactgggttaagatgtcaattttgggacacatcctcagtagtgtgccttcgaatcagtgggtgtttcggcctttaatcactaaacaccc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1066425 lncRNA upstream 10268 2653182 ~ 2653387 (+) True G935231
TU1066415 lncRNA upstream 17404 2646023 ~ 2646251 (+) True G935221
TU1066412 lncRNA upstream 17831 2645583 ~ 2645824 (+) True G935219
TU1066389 lncRNA upstream 90579 2572733 ~ 2573076 (+) True G935196
TU1066214 lncRNA upstream 132706 2530205 ~ 2530949 (+) True plod2
TU1066440 lncRNA downstream 313 2664341 ~ 2664900 (+) True G935246
TU1066442 lncRNA downstream 1182 2665210 ~ 2665454 (+) True G935248
TU1066446 lncRNA downstream 15961 2679989 ~ 2680283 (+) True G935252
TU1066477 lncRNA downstream 36190 2700218 ~ 2700457 (+) True G935265
TU1066479 lncRNA downstream 36672 2700700 ~ 2700931 (+) True G935267
XM_036934659.1 mRNA upstream 132681 2419346 ~ 2530974 (+) False plod2
XM_036934661.1 mRNA upstream 132681 2419346 ~ 2530974 (+) False plod2
XM_036934660.1 mRNA upstream 133995 2419339 ~ 2529660 (+) False plod2
XM_036934658.1 mRNA upstream 276063 2376701 ~ 2387592 (+) True si:ch73-206p6.1
XM_021620030.2 mRNA upstream 808086 1843164 ~ 1855569 (+) False LOC110535167
XR_005034533.1 mRNA downstream 583798 3247826 ~ 3249391 (+) False LOC118937290
XR_005034785.1 mRNA downstream 738024 3402052 ~ 3402867 (+) True LOC118937434
XM_021620035.2 mRNA downstream 859529 3523557 ~ 3616312 (+) False jph1a
XM_036934667.1 mRNA downstream 859529 3523557 ~ 3616312 (+) True jph1a
XM_021620039.2 mRNA downstream 969912 3633940 ~ 3636886 (+) True LOC110535177
TU1065679 other upstream 754575 1908660 ~ 1909080 (+) True G934640
TU1065592 other upstream 836289 1826627 ~ 1827366 (+) True G934579
TU1065194 other upstream 1167641 1488076 ~ 1496014 (+) False G934256
TU1065095 other upstream 1355896 1307527 ~ 1307759 (+) True G934169
TU1064658 other upstream 1712071 949531 ~ 951584 (+) True G933799
TU1067186 other downstream 886011 3550039 ~ 3550487 (+) True G935846
TU1067342 other downstream 1316743 3980771 ~ 3981151 (+) True G935976
TU1067343 other downstream 1317823 3981851 ~ 3982198 (+) True G935977
TU1068725 other downstream 2355877 5019905 ~ 5021613 (+) False G937051
TU1068724 other downstream 2356132 5020160 ~ 5028145 (+) True G937051

Expression Profile