RNA id: TU1066787


Basic Information

Item Value
RNA id TU1066787
length 329
lncRNA type inter_gene
GC content 0.39
exon number 1
gene id G935529
representative True

Chromosome Information

Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 2958229 ~ 2958557 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CGTTGGAGCTCGCAGCCTAAGATGTTCATTGTACCCTGAAATCACACCTGCAACTCTGTATATGTCACTATTAAACACTGAtgactaactaaacacactgaATCTAAAACAATCCCTATTGAATTACTACATACTACCTCCACATTATTGCTGTATCTTTTTATGTCGTAGCCACATTTCTCAAACACACGTACTCATTAGCATGATGGGAAAAaaagaggctacatacagtggggcaaaaaagtatttagtcagccaccaattgtgcaagttctcccacttaaaaagatgagagaggcctgtaattttcatcataggtacacttcaac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1066781 lncRNA upstream 9614 2948403 ~ 2948615 (+) True G935523
TU1066767 lncRNA upstream 32702 2925294 ~ 2925527 (+) True G935509
TU1066751 lncRNA upstream 39520 2917910 ~ 2918709 (+) True G935500
TU1066690 lncRNA upstream 80285 2877741 ~ 2877944 (+) True G935458
TU1066684 lncRNA upstream 83860 2873891 ~ 2874369 (+) True G935452
TU1066790 lncRNA downstream 2046 2960603 ~ 2960805 (+) True G935532
TU1066838 lncRNA downstream 34014 2992571 ~ 2992949 (+) True G935570
TU1066843 lncRNA downstream 38963 2997520 ~ 2997726 (+) True G935575
TU1066845 lncRNA downstream 42859 3001416 ~ 3001699 (+) True G935577
TU1066862 lncRNA downstream 62606 3021163 ~ 3022098 (+) True G935593
XM_036934659.1 mRNA upstream 427255 2419346 ~ 2530974 (+) False plod2
XM_036934661.1 mRNA upstream 427255 2419346 ~ 2530974 (+) False plod2
XM_036934660.1 mRNA upstream 428569 2419339 ~ 2529660 (+) False plod2
XM_036934658.1 mRNA upstream 570637 2376701 ~ 2387592 (+) True si:ch73-206p6.1
XM_021620030.2 mRNA upstream 1102660 1843164 ~ 1855569 (+) False LOC110535167
XR_005034533.1 mRNA downstream 289269 3247826 ~ 3249391 (+) False LOC118937290
XR_005034785.1 mRNA downstream 443495 3402052 ~ 3402867 (+) True LOC118937434
XM_021620035.2 mRNA downstream 565000 3523557 ~ 3616312 (+) False jph1a
XM_036934667.1 mRNA downstream 565000 3523557 ~ 3616312 (+) True jph1a
XM_021620039.2 mRNA downstream 675383 3633940 ~ 3636886 (+) True LOC110535177
TU1065679 other upstream 1049149 1908660 ~ 1909080 (+) True G934640
TU1065592 other upstream 1130863 1826627 ~ 1827366 (+) True G934579
TU1065194 other upstream 1462215 1488076 ~ 1496014 (+) False G934256
TU1065095 other upstream 1650470 1307527 ~ 1307759 (+) True G934169
TU1064658 other upstream 2006645 949531 ~ 951584 (+) True G933799
TU1067186 other downstream 591482 3550039 ~ 3550487 (+) True G935846
TU1067342 other downstream 1022214 3980771 ~ 3981151 (+) True G935976
TU1067343 other downstream 1023294 3981851 ~ 3982198 (+) True G935977
TU1068725 other downstream 2061348 5019905 ~ 5021613 (+) False G937051
TU1068724 other downstream 2061603 5020160 ~ 5028145 (+) True G937051

Expression Profile