RNA id: TU1066976


Basic Information

Item Value
RNA id TU1066976
length 5558
lncRNA type antisense_over
GC content 0.46
exon number 4
gene id G935683
representative False

Chromosome Information

Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 3234690 ~ 3242368 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AGGCCTATGGCAcatcaagggaactgtagcctcctgttcagatgggttaaatggaaactaAAATGTTGcagactgtaggtctataacctctcacatatcCTTAGTATTAAGTCCTGCATGAAtgaagcatttcttgcagtaaaaggATACACCAAATGTAGGCAACATTATAACTCGGGAACAGGAGTGGAATAATAGGAtttatttctttcagcatcttgagagaatgcgaatgtgcagttaaaaaaatacatcacctttacagacggtccctaactgtGGTTGAAATACTCTCATATATTCAtatatgatgctgataaagatagcacctttacagacggtccctaactgtGGTTGAAATACTCTCAGCtgttatgatgctgataaagatagcacctttacagacggtccctgtctttatcagcatcataacaGCTGatcgtatttcaaccacataaataTGCATCCAAGCTGACCTGAAAtctatcagaaacatgttgggttgttttcactgctttctatttccttacaaccggtcaaactgatgtcatttggaaaattattgcattttctccccggtccctaaacgtCTTTGCTCCGTGAAAAAAGAAGAGATGACAGAGAACTTTAGCGATGTCAACTAAATGTATGCATTCATTCTACATATTTATGACATTATTCAGGTGAGCAAAGGTTTATTTATTCTTCTAGGGCAACatgtaatgacagaagagaagcggcacgtatctaattatagacaagttgcaAATAGCCAAACAAAATGTCAAATTATAAGCAGGAACATTTTCTCTATTAGCGGGTTAGGGTCGGGTGCGGGCACAACGGGTTAGGGTCGGGCCACAGCGGGTTAGGGTCGGGTGCGGGCCACAGCGGGTTAGGATCGGGCCACAGCGGGCTAGGGTCGGGTGCGGGCCACAGCGGGTTAGGATCGGGCCACAGCGGGTTAGGGTCGGGTGCGGGCCACAGCGGGTTAGGGTCAGGACACAGGGGGTTAGGGTCGGGTGCGGGCCACAGCGAGGTAGGGTCAGGACACAGCGGGTTAGGGTCGGGTGCGGGCCACAGCGGGTCGGGTGCGGGCCACAGCGGGTTAGGGTCAGGATACAGCGGGTTAGGGTCGGGTGCGGGCCACAGCGGGTTAGGGCCGGGTGCGGGCCACAGTGGGTTAGGGCCGGGTGCGGGACACAGCGGGTTAGGGCCGTGTGCGGGACACAGCGGGTTAGGGTCGGGACACAGCGGGTTAGGGTCGGGTGTGGGCCACAGCGGGTTAGGGCCGGGTGCGGGACACAGCGGGTTAGGGCCGTGTGCGGGACACAGCGGGTTAGGGTCGGGACACAGCGGGTTAGGGTCGGGTGCGGGCCACAGCGGGTCGGGTGCGGGCCACAGCGGGTTAGGGTCAGGACACAGCGGGTTAGGGTCGGGTGCGGGCCACAGCGGGTTAGGGCCGGGTGCGGAACACAGCGGGTTAGGGCCGTGTGCGGGACACAGCGGGTTAGGGTCGGGACACAGCGGGTTAGGGTCGGGACACAGCGGGTTAGGGTCGGGACACAGCGGGTTAGGGTCGGGACACAGCGGGTTAGGGTCGGGACACAGCGGGTTAGGGTCGGGTGCGGGCCACACATTTCACTTCATCACATATAGTCTGGTGGCTGTGGATGGGTTATTAGAAATTGCTGGAGGGTGCGGGCAACAGCGGGATAGGGTCGGGTGCGTGTTAACAAAGTTGAGCCACACACAACTAGCACACACTTACAGATACACACAGAGTCAAAACACGATGGAGGCACAGAAAAAGGACTATCGGGATGCGCTCAGTCAGGCATAAGAGTGAGTGatggaaataaataaatgtgttttgAAAAGGCTAAAATTAGGCCAATCATAACCTGCAGTCAAAAACACCTGAAAACACCTGTAGTGACAACCTGAGCGAAAGTAATGACAGAGAGTCAGCGATTGACAGAAAAGTCAACAACACACCAggtaagtatatatatatatattcatatattttaATATTTAAACCCACTAAAAAGTTGTAAATACAACCTTTGAATGAAAGGCACAGTAAAATCAGACACTGCTGATATAAAATACTCAAATGAAAAATTACAGTACAAAAGCGGACAGTTATTTACGCACATACAAATCCCTCCTCCAACAACAGAACGAACCAATCACAATCCTCCAGGCCAGGGAAACATTCCAAAAcaatgtgtgtcccaaatggcagcctattccctatatagtgcacttctttagtAGCCTAGCTAAACCAGCCTGATTCCCTATACAGAGCACTCCTTTAGTAGCCTAGCTAAACCAGCCTGATTCCCTATACAGAGCACTCCTTTAGTAGCCTAGCTAAACCAGCCTGATTCCCTATACAGAGCACTCCTTTAGTAGCCTAGCTAAACCAGCCTGATTCCCTATACAGAGCACTCCTTTAGTAGCCTAGCTAAACCAGCCTGATTCCCTATATAGAGTACTCCTTTAGTAGCCTAGCTAAACCAGCCTGATTCCCTATAcagagggaatttttactaataaagtagtgctctatatagggaatcaGGCTGGTTTAGCTAGgctacaaaagtagtgcactttatagggaatcgTACATGTACTGTATGGTAGATTGTATTGACTGTAAATTACTATCTGATTGTGTTTATAgacctctcaaatggcaccctattccctatttagagccagagggctttggtcaaaagttgtgcactatatagcgaatagggtgccactGTCTATATAGAATGTAGTGTACAGCACTGACTGTTGGATATTGATTTTCTGTTCCCTAGCTCTGAGAAGAAAGGACGTTGTTTTTCTGTTCCCTAGCTCTGAGAAGAAAGGACGTTGTTATTCTGTTCCCTAGCTCTGAGAAGAAAGGACGTTGTTTTTCTGTTCCCTAGCTCTGAGAAGAAAGGACGTTGTTTTTCTGTTCCCTAGCTCTGAGAAGAAAGGACGTTGTTTTTCTGTTCCCTAGCTCTGAGAAGAAAGGACGTTGATTTTCTGTTCCCTAGCTCTGAGAAGAAAGGACGTTGTTTTTCTGTTCCCTAGCTCTGAGAAGAAAGGACGTTGTTTTTCTGTTCCCTAGCTCAGAGGAAAGGACGTTGTTTTTCTGTTCCCTAGCTCAGAGGAAAGGACGTTGTTTTTCTGTTCCCTAGCTCTGAGAAGAAAGGACGTTGTTTTTCTGTTCCCTAGCTCCGAGAAGAAAGGACGTTGTTTTTCTGTTCCCTAGCTCTGAGAAGAAAGGACGTTGTTTTTCTGTTCCCTAGCTCCGAGAAGAAAGGACGTTGTTTTTCTGTTCCCTAACTCTGAGAAGAAAGGACGTTGTTTTTCTGTTCCCTAGCTCTGAGAAGAAAGGACGTTGTTTTTCTGTTCCCTAGCTCTGAGAAGAAAGGACGTTGTTTTTCTGTTCCCTAGCTCCGAGAAGAAAGGACGTTGTTTTTCTATTCCCTAGCTCTGAGAAGAAAGGACGTTGTTTTTCTGTTCCCTAGCTCTGAGAAGAAAGGACGTTGTTTTTCTGTTCCCTAGCTCAGAGGAAAGGACGTTGTTTTTCTGTTCCCTAACTCTGAGAAGAAAGGACGTTGTTTTTCTGTTCCCTAGCTCTGAGAAGAAAGGACGTTGTTTCTCTGTTCCCTAGCTCCGAGAAGAAAGGACGTTGTTTTTCTGTTCCCTAGCTCAGAGGAAAGGACGTTGTTTTTCTGTTCCCTAGCTCTGAGAAGAAAGGACGTTGTTTTTCTGTTCCCTAGCTCTGAGAAGAAAGGACGTTGTTTTTCTGTTCCCTAGCTCTGAGAAGAAAGGACGTTGTTTTTCTGTTCCCTAGCTCCGAGAAGAAAGGACGTTGTTTTTCTGTTCCCTAGCTCTGAGAAGAAAGGACGTTGTTTTTCTGTTCCCTAGCTCTGAGAAGAAAGGACGTTGTTTTTCTGTTCCCTAGCTCTGAGAAGAAAGGACGTTGTTTTTCTGTTCCCTAGCTCTGAGAAGAAAGGACGTTGTTTTTCTGTTCCCTAGCTCCGAGAAGAAAGGACGTTGTTTTTCTGTTCCCTAGCTCCGAGACAAAAGGACGCTGAGCTACAACAAACTTCTCACTATTCAAATGAACATACAGTGCATTATGATTACTTGGGCTTTAATTTATTGGTCCACCAAGTGCAAAATCAACCCAAATGTGCTAATTTGTTGGAGATAAAACATACAGGCCATTTAAAGCTGTATGGCTCAAAGTGAAGCTGAGCAGTGAGGAGGCAACGTTTAATAATGAACACAAAACTCTGTGAAATTACGACATGTGAGGAGCCAAATCTGGGTTGTTGAGGAAGTAGATAAAACGCACAGAACAAGACAGATTCCTTTTTCAAACAGTCAGACATGGAATCATTTATCAATTACAGACTCTGTGGGTACTGCATTCCACTGCAATGGCAATGCGATATTCACACTGTGGCCCAATTCTTAGGGTCTGTTTGAAAATGCATCCACCCTTCCTTTAATTATCTCTTGAAGTAATCACTGATTCAACACAGAGAAGGGAGCTTGGTTAACTCTGACCCTGGGCTTAGCTCTGATTCAACACAGAGAAGGGAGCTTGGTTAACTCTGACCCTAGGCTTAGCTCTGATTTAACACAGAGAAGGGAGCTTGGTTAACTCTGACCCTGGGCTTAGCTCTGATTTAACACAGAGAAGGGAGCTTGGTTAACTCTGACCCTGGGCTTAGTTCTGATTTAACACAAAGAAGTGAGCTTGGTTAACTCTGACCCTGGGCTTAGCTCTGATTTAACACAGAGAAGGGAGCTTGGTTCTGATTCAACACAGAGAAGGGAGCTTGGTTCTGATTTAACACAGAGAAGGGAGCTTGGTTAACTCTGACCCTGGGCTTGGTTCTGATTCAACACAGAGAAGGGAGCTTGGTTAACTCTGACCCTGGGCCTAGTTCTGATTCAATACAGAGAAGGGAGCTTGGTTAACTCTGACCCTGGGCCTAGTTCTGATTCAATACAGAGAAGGGAGCTTGGTTAACTCTGCCCCTGGGCTTAGTTCTGATTCAACACAGAGAAGGGAGCTTGGTTAACTCTGACCCTGGGCTTAGCTCTGATTTAACACAGAGAAGGGAGCTTGGTTCTGATTCAACACAGAGAAGGGAGCTTGGTTCTGATTTAACACAGAGAAGGGAGCTTGGTTAACTCTGACCCTGGGCTTAGCTCTGATTTAACACAGAGAAGGGAGCTTGGTTAACTCTGACCCTGGGCTTAGCTCTGATTTAACACAGAGAAGGGAGCTTGGTTAACTCTGACCCTGGGCTTAAGTTGGATTCATACAATCGTTCCTATGCAGATTGTGTTGCCAGACAGATGGAGGGAAGGTTCCTCTGGGCAGTCATACAGGATCAGAACAGCGTTGTGTCATGGTACTGGGGGGTAGTTCAGTGTTTCATATAGCCTCTTTGGTAAAcacacacaacatctaataccAGATTCTGCACCACCACAGTCCTCATTGGCATCACTatcctgtt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1066966 lncRNA upstream 53625 3180398 ~ 3181065 (+) True G935680
TU1066957 lncRNA upstream 59343 3175138 ~ 3175347 (+) True G935673
TU1066934 lncRNA upstream 76367 3158082 ~ 3158323 (+) True G935658
TU1066930 lncRNA upstream 77860 3156592 ~ 3156830 (+) True G935654
TU1066928 lncRNA upstream 81535 3152688 ~ 3153155 (+) True G935652
TU1067001 lncRNA downstream 7122 3248430 ~ 3249335 (+) True LOC118937290
TU1067016 lncRNA downstream 42699 3284007 ~ 3284298 (+) True G935719
TU1067019 lncRNA downstream 46242 3287550 ~ 3288344 (+) False G935722
TU1067020 lncRNA downstream 46242 3287550 ~ 3288845 (+) True G935722
TU1067021 lncRNA downstream 49095 3290403 ~ 3290882 (+) True G935723
XM_036934659.1 mRNA upstream 703716 2419346 ~ 2530974 (+) False plod2
XM_036934661.1 mRNA upstream 703716 2419346 ~ 2530974 (+) False plod2
XM_036934660.1 mRNA upstream 705030 2419339 ~ 2529660 (+) False plod2
XM_036934658.1 mRNA upstream 847098 2376701 ~ 2387592 (+) True si:ch73-206p6.1
XM_021620030.2 mRNA upstream 1379121 1843164 ~ 1855569 (+) False LOC110535167
XR_005034533.1 mRNA downstream 6518 3247826 ~ 3249391 (+) False LOC118937290
XR_005034785.1 mRNA downstream 160744 3402052 ~ 3402867 (+) True LOC118937434
XM_021620035.2 mRNA downstream 282249 3523557 ~ 3616312 (+) False jph1a
XM_036934667.1 mRNA downstream 282249 3523557 ~ 3616312 (+) True jph1a
XM_021620039.2 mRNA downstream 392632 3633940 ~ 3636886 (+) True LOC110535177
TU1065679 other upstream 1325610 1908660 ~ 1909080 (+) True G934640
TU1065592 other upstream 1407324 1826627 ~ 1827366 (+) True G934579
TU1065194 other upstream 1738676 1488076 ~ 1496014 (+) False G934256
TU1065095 other upstream 1926931 1307527 ~ 1307759 (+) True G934169
TU1064658 other upstream 2283106 949531 ~ 951584 (+) True G933799
TU1067186 other downstream 308731 3550039 ~ 3550487 (+) True G935846
TU1067342 other downstream 739463 3980771 ~ 3981151 (+) True G935976
TU1067343 other downstream 740543 3981851 ~ 3982198 (+) True G935977
TU1068725 other downstream 1778597 5019905 ~ 5021613 (+) False G937051
TU1068724 other downstream 1778852 5020160 ~ 5028145 (+) True G937051

Expression Profile