Gene
RNA
| Item | Value |
|---|---|
| RNA id | TCONS_00039044 |
| length | 689 |
| RNA type | mRNA |
| GC content | 0.53 |
| exon number | 3 |
| gene id | XLOC_019844 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_007132.7 |
| NCBI id | CM002905.2 |
| chromosome length | 45934066 |
| location | 42970983 ~ 43022048 (-) |
| genome version | GRCz11_2017_zebrafish_Genome |
| species | zebrafish (Danio rerio) |
| id | name | namespace |
|---|---|---|
| GO:0051764 | actin crosslink formation | biological_process |
| GO:0051491 | positive regulation of filopodium assembly | biological_process |
| GO:0010975 | regulation of neuron projection development | biological_process |
| GO:0051017 | actin filament bundle assembly | biological_process |
| GO:0048936 | peripheral nervous system neuron axonogenesis | biological_process |
| GO:0048678 | response to axon injury | biological_process |
| GO:0007409 | axonogenesis | biological_process |
| GO:0007411 | axon guidance | biological_process |
| GO:0030334 | regulation of cell migration | biological_process |
| GO:0042995 | cell projection | cellular_component |
| GO:0030426 | growth cone | cellular_component |
| GO:0005737 | cytoplasm | cellular_component |
| GO:0016787 | hydrolase activity | molecular_function |
| GO:0016810 | hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds | molecular_function |
| id | description |
|---|---|
| ZDB-GENE-050720-2 | Predicted to enable hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds. Acts upstream of or within axon guidance and peripheral nervous system neuron axonogenesis. Predicted to be located in cytoplasm and growth cone. Is expressed in nervous system; neural plate; spinal cord neural tube; and trigeminal placode. Orthologous to human DPYSL3 (dihydropyrimidinase like 3). |
| ensembl_id | ENSDART00000138329 |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TCONS_00039699 | lncRNA | downstream | 847624 | 42150360 ~ 42156252 (-) | True | XLOC_019840 |
| TCONS_00039698 | lncRNA | downstream | 847628 | 42150360 ~ 42156248 (-) | False | XLOC_019840 |
| TCONS_00039697 | lncRNA | downstream | 847642 | 42150360 ~ 42156234 (-) | False | XLOC_019840 |
| TCONS_00039696 | lncRNA | downstream | 847642 | 42150360 ~ 42156234 (-) | False | XLOC_019840 |
| TCONS_00039694 | lncRNA | downstream | 847670 | 42150360 ~ 42156206 (-) | False | XLOC_019840 |
| TCONS_00039700 | lncRNA | upstream | 224659 | 43246707 ~ 43251824 (-) | True | XLOC_019849 |
| TCONS_00039701 | lncRNA | upstream | 303233 | 43325281 ~ 43325892 (-) | True | XLOC_019850 |
| TCONS_00039065 | lncRNA | upstream | 447281 | 43469329 ~ 43474000 (-) | True | XLOC_019855 |
| TCONS_00039702 | lncRNA | upstream | 662814 | 43684862 ~ 43700254 (-) | False | XLOC_019864 |
| TCONS_00039703 | lncRNA | upstream | 662814 | 43684862 ~ 43700262 (-) | False | XLOC_019864 |
| TCONS_00039042 | mRNA | downstream | 127311 | 42870101 ~ 42876565 (-) | True | XLOC_019843 |
| TCONS_00039041 | mRNA | downstream | 172843 | 42785516 ~ 42831033 (-) | True | XLOC_019842 |
| TCONS_00039040 | mRNA | downstream | 801084 | 42156949 ~ 42202792 (-) | True | XLOC_019841 |
| TCONS_00039039 | mRNA | downstream | 906140 | 42050886 ~ 42097736 (-) | True | XLOC_019839 |
| TCONS_00039038 | mRNA | downstream | 948004 | 42050362 ~ 42055872 (-) | False | XLOC_019839 |
| TCONS_00039045 | mRNA | upstream | 7660 | 43029708 ~ 43040780 (-) | False | XLOC_019845 |
| TCONS_00039046 | mRNA | upstream | 7660 | 43029708 ~ 43043523 (-) | False | XLOC_019845 |
| TCONS_00039047 | mRNA | upstream | 14479 | 43036527 ~ 43065657 (-) | False | XLOC_019845 |
| TCONS_00039048 | mRNA | upstream | 14622 | 43036670 ~ 43079161 (-) | False | XLOC_019845 |
| TCONS_00039049 | mRNA | upstream | 18174 | 43040222 ~ 43065657 (-) | True | XLOC_019845 |
| TCONS_00039031 | other | downstream | 1130779 | 41863654 ~ 41873097 (-) | True | XLOC_019836 |
| TCONS_00039016 | other | downstream | 1652211 | 41351545 ~ 41351665 (-) | True | XLOC_019828 |
| TCONS_00039012 | other | downstream | 1752328 | 41251431 ~ 41251548 (-) | True | XLOC_019825 |
| TCONS_00038990 | other | downstream | 2592229 | 40403260 ~ 40411647 (-) | True | XLOC_019813 |
| TCONS_00038972 | other | downstream | 2921947 | 40077951 ~ 40081929 (-) | True | XLOC_019807 |
| TCONS_00039061 | other | upstream | 368353 | 43390401 ~ 43393079 (-) | True | XLOC_019853 |
| TCONS_00039085 | other | upstream | 732929 | 43754977 ~ 43801511 (-) | True | XLOC_019865 |
| TCONS_00039098 | other | upstream | 1546132 | 44568180 ~ 44568266 (-) | True | XLOC_019876 |
| TCONS_00039112 | other | upstream | 2175294 | 45197342 ~ 45209405 (-) | False | XLOC_019883 |
