RNA id: TU1067342


Basic Information

Item Value
RNA id TU1067342
length 381
RNA type TUCP
GC content 0.43
exon number 1
gene id G935976
representative True

Chromosome Information

Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 3980771 ~ 3981151 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gtctctactgctctatgtctctactctactgctctatgtctctactgctctatgtctctactctactgctctatgtctctactgctctatgtctctactgctctatgtctctactctactgctctatgtctctactctactgctctatgtctctactctactgctctatgtctctactctactgctctatgtctctactgctctatgtctctactctactgctctatgtctctactgctctatgtctctactttactgctctatgtctctactctactgctctgtctctactctactgctctatgtctctactgctctatgtctttactgctctatgtctctactctactgctctatgtctctactgctctatgtctctac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1067341 lncRNA upstream 4862 3975620 ~ 3975909 (+) True G935975
TU1067340 lncRNA upstream 6267 3974223 ~ 3974504 (+) True G935974
TU1067338 lncRNA upstream 7279 3973261 ~ 3973492 (+) True G935972
TU1067336 lncRNA upstream 8908 3971290 ~ 3971863 (+) True G935970
TU1067334 lncRNA upstream 14501 3965807 ~ 3966270 (+) True G935968
TU1067344 lncRNA downstream 3792 3984943 ~ 3985216 (+) True G935978
TU1067350 lncRNA downstream 10628 3991779 ~ 3991986 (+) True G935984
TU1067355 lncRNA downstream 13848 3994999 ~ 3997344 (+) True G935989
TU1067365 lncRNA downstream 31615 4012766 ~ 4013998 (+) True G935998
TU1067369 lncRNA downstream 34825 4015976 ~ 4035132 (+) True G936000
XR_005034534.1 mRNA upstream 19638 3683874 ~ 3961133 (+) True stau2
XM_036934668.1 mRNA upstream 21656 3683874 ~ 3959115 (+) False stau2
XM_036934669.1 mRNA upstream 21656 3683874 ~ 3959115 (+) False stau2
XM_036934670.1 mRNA upstream 21656 3683874 ~ 3959115 (+) False stau2
XM_021620038.2 mRNA upstream 304305 3652795 ~ 3676466 (+) True flj11011l
XM_036934672.1 mRNA downstream 37041 4018192 ~ 4024376 (+) True LOC110536525
XR_005034816.1 mRNA downstream 38663 4019814 ~ 4019908 (+) True LOC118937477
XR_005034817.1 mRNA downstream 39329 4020480 ~ 4020575 (+) True LOC118937478
XR_005034818.1 mRNA downstream 40089 4021240 ~ 4021332 (+) True LOC118937479
XR_005034819.1 mRNA downstream 42446 4023597 ~ 4023692 (+) True LOC118937480
TU1067186 other upstream 430284 3550039 ~ 3550487 (+) True G935846
TU1065679 other upstream 2071691 1908660 ~ 1909080 (+) True G934640
TU1065592 other upstream 2153405 1826627 ~ 1827366 (+) True G934579
TU1065194 other upstream 2484757 1488076 ~ 1496014 (+) False G934256
TU1065095 other upstream 2673012 1307527 ~ 1307759 (+) True G934169
TU1067343 other downstream 700 3981851 ~ 3982198 (+) True G935977
TU1068725 other downstream 1038754 5019905 ~ 5021613 (+) False G937051
TU1068724 other downstream 1039009 5020160 ~ 5028145 (+) True G937051
TU1068784 other downstream 1162166 5143317 ~ 5144565 (+) True G937096
TU1068947 other downstream 1523553 5504704 ~ 5505329 (+) True G937237

Expression Profile