RNA id: TU1067355


Basic Information

Item Value
RNA id TU1067355
length 2278
lncRNA type inter_gene
GC content 0.41
exon number 2
gene id G935989
representative True

Chromosome Information

Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 3994999 ~ 3997344 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AGACGCTAAACATAGGAACCACATCTGCTCGACTAAAGAGCAGTCTTTCagaaagaacaacaacaacaacaaaagaaaagAGGATTTATGTCATACTGTCAACGAAATGGCAAATGAAGAGGTAGAGTATTTAGGCTCATTACCGTAGCTGGAGGAATGAGGCCTATTGGAATGTAGTTGTAGTTGTGTTCTTCCCTAAAATagatcaaatatatatataaccaaATATCAAATACAGGGGAGACTAAGGTTGCAAATGTACAGCAcatttccccaaattcccagaaATCCCGGTTGGAGGATTTCCTGTTTTTTCCTACACATCTTGATTCCTGAAACCTTTTTAACTAAGATTTCTAGACAAATCAGGGATGGATTTTTTTTTAGGAAAGTTACCAGAAATGTGCAACCCAAGTGAAAAAATAATTTCCATGGAGGGAATTGTGGGTAATGTAGTACTGTACTCAAAACAACTCAACCAACGTTTACATTTTCACCTTCACTGGACACAAGTAGTGGGGGACGATAGAGAGAGACTAATGAATGTAGTGgaggacaatagagagagagagagagagagagagagagagtaatgaatgtagtggaggatgagagagagagagagagagagagagagagagtaatgaatgtagtggaggatgagagagagagagagactaatgaATGTAGTGGaggacgatagagagagagagagagagagagagagagactaatgaATGTAGTGGaggacgatagagagagagagagagagagagactaatgaATGTAGTGGaggacgatagagagagagagagagagagagactaatgaATGTAGTGGaggacgatagagagagagagagagagactaatgaATGTAGTGGaggacgatagagagagagagagagagagagactaatgaATGTAGTggaggatgagaaagagagagagagagagagagagactaatgaATGTagtggaggacgagagagagagagagagagagagagagagactaatgaATGTAGTGGaggacgatagagagagagagagactaatgaATGTAGTGGaggacgatagagagagagagagactaatgaATGTAGTGGaggacgatagagagagagagagagagagagactaatgaATGTAggtggaggacgagagagagagagagactaagacgTGTTTTCACTAAGAcgtgaaaacagacagtagagttTCTAGATCAGCTAGCTACACAGTTCCTCCACTCACAGATCATTCACTGGGAGATAAAGGGCTGGTCATTGGTTGGATTGGAAGTATGTCTTATGGGGAAAATGCTAAAAAGCCAGTAGTCATcagtatcaatcaatcaatacccATATCAGAGTTCAGAAGGGTATTGAGCCTTCAGGCTGATTGACCCCATCAGTTCAACCAGAGGACCTAGGGGCTGCAAAATTCCAGTACCTTTCAACAGGTTGAAGTTTgccatgaatcttgttctggaggcagaactgagccatTTCTGCTAGATAGGGTAAGGTTGGCGTTTTTCaccatgaatcttgttctggaggcagaactgagccatTTCTGCTAGATGGGGTAAGGTTGGCGTTTTTCaccatgaatcttgttctggaggcaaatcTGCACGGTGGTCACTATCTGGCATAGCCACAAAATCAGATTTGAACCCTAACTTTAAATTAAGACTAAAAAAGCACATTTGTTTTTATGAatgtagccaattttgactttgcagctggcccatctagcagaaatggctcagttctgcctcaaggacaagactcatcccaataaacGTCAACTTGCCTAGATGGGagagctgcaaagtcaaaatgtgctatattgtaaaaattcctgtcaaacaagaaaaaaaagtgatttttgatctaatttaaggttaggcattagggtgaTCAATGTGGTTAAGGTTAAAAATGACTctattttatgactttgtggcagATTCATGACATAAAAACATGCGATTCtaggaatcttccaaccaggatttctggaaaacgcCTGGAAACTCAGACAGGACGATATCTGAAAACTGACTTGGTTGAATTCCACAGCCCATTTACATTTACAATACATCTGGACCTTCTGAAATGTGTCACCCGATTGGATAAGCCTCAGGTAGGTCAGCCAATGTGCGAACTAATATTCCAATATTCTGTACCACTATTCtaacaggagagaaatggaggaTTCAGCTGGAAAGATGAATAGAAAACTTCTCTGGGGGAGAAAAACAATAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1067350 lncRNA upstream 3013 3991779 ~ 3991986 (+) True G935984
TU1067344 lncRNA upstream 9783 3984943 ~ 3985216 (+) True G935978
TU1067341 lncRNA upstream 19090 3975620 ~ 3975909 (+) True G935975
TU1067340 lncRNA upstream 20495 3974223 ~ 3974504 (+) True G935974
TU1067338 lncRNA upstream 21507 3973261 ~ 3973492 (+) True G935972
TU1067365 lncRNA downstream 15422 4012766 ~ 4013998 (+) True G935998
TU1067369 lncRNA downstream 18632 4015976 ~ 4035132 (+) True G936000
TU1067366 lncRNA downstream 34215 4031559 ~ 4034285 (+) False G935999
TU1067367 lncRNA downstream 34215 4031559 ~ 4033171 (+) False G935999
TU1067368 lncRNA downstream 34215 4031559 ~ 4034285 (+) True G935999
XR_005034534.1 mRNA upstream 33866 3683874 ~ 3961133 (+) True stau2
XM_036934668.1 mRNA upstream 35884 3683874 ~ 3959115 (+) False stau2
XM_036934669.1 mRNA upstream 35884 3683874 ~ 3959115 (+) False stau2
XM_036934670.1 mRNA upstream 35884 3683874 ~ 3959115 (+) False stau2
XM_021620038.2 mRNA upstream 318533 3652795 ~ 3676466 (+) True flj11011l
XM_036934672.1 mRNA downstream 20848 4018192 ~ 4024376 (+) True LOC110536525
XR_005034816.1 mRNA downstream 22470 4019814 ~ 4019908 (+) True LOC118937477
XR_005034817.1 mRNA downstream 23136 4020480 ~ 4020575 (+) True LOC118937478
XR_005034818.1 mRNA downstream 23896 4021240 ~ 4021332 (+) True LOC118937479
XR_005034819.1 mRNA downstream 26253 4023597 ~ 4023692 (+) True LOC118937480
TU1067343 other upstream 12801 3981851 ~ 3982198 (+) True G935977
TU1067342 other upstream 13848 3980771 ~ 3981151 (+) True G935976
TU1067186 other upstream 444512 3550039 ~ 3550487 (+) True G935846
TU1065679 other upstream 2085919 1908660 ~ 1909080 (+) True G934640
TU1065592 other upstream 2167633 1826627 ~ 1827366 (+) True G934579
TU1068725 other downstream 1022561 5019905 ~ 5021613 (+) False G937051
TU1068724 other downstream 1022816 5020160 ~ 5028145 (+) True G937051
TU1068784 other downstream 1145973 5143317 ~ 5144565 (+) True G937096
TU1068947 other downstream 1507360 5504704 ~ 5505329 (+) True G937237
TU1069683 other downstream 2124240 6121584 ~ 6122269 (+) False G937889

Expression Profile