RNA id: TU1067368


Basic Information

Item Value
RNA id TU1067368
length 687
lncRNA type inter_gene
GC content 0.37
exon number 3
gene id G935999
representative True

Chromosome Information

Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 4031559 ~ 4034285 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TCTTTATTTAACAGAATATTTCACGAACACATTCGAGTATCTCCTTCCTGTGTACAGACAAGATGTGACGTTCCAAAATGAGAGATGACTACTTTACAATAACACAATTGTTATTTTGTATTGTCCCTATTGCAGAAATAAATACACTgtgaaatatataaaataaacacAAAGACATTTTTATTAAATGTTGGACCAATTTTTCCATTTCTATTGAACAATTTGTTCAGATCGTTGTTTCTTTAGCCACTGATAACTAGAAGGATAAATggttttgtaaaaaaataataaactaAAGTTGAAATACAAGTTAAGCTGCTATTGTCCACAGAAAGATATATAGCTCCCTCTGCTGGTCACTGGTAGTAATATCATGCCAGCTACTGCTGGTCACTGGTAGTAATATCATGCCAGCTACTGGTGGTCACTGGTAGTAATATCATGCCAGCTACTGGTGGTCACTGGTAGTAATATCATGCCAGCTACTGGTGGTTACCGGTTAATGGCATTGAAGCCTTGTGTTAAGAAAGGCCGGGATACAACCCAGTTTCAGGTTGAACACAATGCAGCTTTTTTAAAACGTTCTCGTGTTTGTTTATGGAGAGTCATGGTAAACCCGGGCATATTTCCACTCAAATGGGACATCGTCTCCCTCGGATTGAATCACAGCCTTAAacttactctctc

Function

GO: NA

KEGG:

id description

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1067365 lncRNA upstream 17561 4012766 ~ 4013998 (+) True G935998
TU1067355 lncRNA upstream 34215 3994999 ~ 3997344 (+) True G935989
TU1067350 lncRNA upstream 39573 3991779 ~ 3991986 (+) True G935984
TU1067344 lncRNA upstream 46343 3984943 ~ 3985216 (+) True G935978
TU1067341 lncRNA upstream 55650 3975620 ~ 3975909 (+) True G935975
TU1067376 lncRNA downstream 1403 4035688 ~ 4035976 (+) True G936007
TU1067845 lncRNA downstream 33325 4067610 ~ 4072748 (+) True G936361
TU1067879 lncRNA downstream 88440 4122725 ~ 4123116 (+) True G936387
TU1067885 lncRNA downstream 97436 4131721 ~ 4131920 (+) True G936392
TU1067913 lncRNA downstream 153675 4187960 ~ 4188162 (+) True G936412
XM_036934672.1 mRNA upstream 7183 4018192 ~ 4024376 (+) True LOC110536525
XR_005034819.1 mRNA upstream 7867 4023597 ~ 4023692 (+) True LOC118937480
XR_005034818.1 mRNA upstream 10227 4021240 ~ 4021332 (+) True LOC118937479
XR_005034817.1 mRNA upstream 10984 4020480 ~ 4020575 (+) True LOC118937478
XR_005034816.1 mRNA upstream 11651 4019814 ~ 4019908 (+) True LOC118937477
XM_036936631.1 mRNA downstream 75127 4109412 ~ 4117403 (+) True LOC118937460
XM_036934674.1 mRNA downstream 457483 4491768 ~ 4568591 (+) False LOC110536527
XM_036934675.1 mRNA downstream 461013 4495298 ~ 4568591 (+) True LOC110536527
XM_036936609.1 mRNA downstream 549331 4583616 ~ 4586582 (+) True LOC118937435
XM_036934676.1 mRNA downstream 785460 4819745 ~ 4956185 (+) False eya1
TU1067343 other upstream 49361 3981851 ~ 3982198 (+) True G935977
TU1067342 other upstream 50408 3980771 ~ 3981151 (+) True G935976
TU1067186 other upstream 481072 3550039 ~ 3550487 (+) True G935846
TU1065679 other upstream 2122479 1908660 ~ 1909080 (+) True G934640
TU1065592 other upstream 2204193 1826627 ~ 1827366 (+) True G934579
TU1068725 other downstream 985620 5019905 ~ 5021613 (+) False G937051
TU1068724 other downstream 985875 5020160 ~ 5028145 (+) True G937051
TU1068784 other downstream 1109032 5143317 ~ 5144565 (+) True G937096
TU1068947 other downstream 1470419 5504704 ~ 5505329 (+) True G937237
TU1069683 other downstream 2087299 6121584 ~ 6122269 (+) False G937889

Expression Profile