RNA id: TU1067958


Basic Information

Item Value
RNA id TU1067958
length 334
lncRNA type inter_gene
GC content 0.32
exon number 4
gene id G936449
representative False

Chromosome Information

Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 4319579 ~ 4324232 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gtagactatattacatggatttattgtgatggtgtaggtagactatattacatggatttattgtgatggtgtaggtagactatattacatgtatttattgtgatggtgtaggtagactatattacatggatttattgtgatggtgtagactatattacatggatttattgtgatggtgtagactattacatggatttattgtgatggtgtaggtaggctatattacatggatttattgtgatggtgtagggagactatattacatggatttattgtgatggtgtagactacattacatggatttattgtgatgttgTAGACTATTACATTGATT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1067951 lncRNA upstream 14777 4304588 ~ 4304802 (+) True G936444
TU1067943 lncRNA upstream 39114 4280246 ~ 4280465 (+) True G936440
TU1067942 lncRNA upstream 44301 4275079 ~ 4275278 (+) True G936439
TU1067941 lncRNA upstream 45756 4273587 ~ 4273823 (+) True G936438
TU1067940 lncRNA upstream 47777 4271569 ~ 4271802 (+) True G936437
TU1067965 lncRNA downstream 7233 4331465 ~ 4331788 (+) True G936452
TU1067975 lncRNA downstream 18671 4342903 ~ 4344147 (+) False G936459
TU1067974 lncRNA downstream 19289 4343521 ~ 4344147 (+) True G936459
TU1067987 lncRNA downstream 42720 4366952 ~ 4401418 (+) True G936470
TU1068002 lncRNA downstream 60158 4384390 ~ 4385052 (+) False G936477
XM_036936631.1 mRNA upstream 202176 4109412 ~ 4117403 (+) True LOC118937460
XR_005034819.1 mRNA upstream 295887 4023597 ~ 4023692 (+) True LOC118937480
XR_005034818.1 mRNA upstream 298247 4021240 ~ 4021332 (+) True LOC118937479
XR_005034817.1 mRNA upstream 299004 4020480 ~ 4020575 (+) True LOC118937478
XR_005034816.1 mRNA upstream 299671 4019814 ~ 4019908 (+) True LOC118937477
XM_036934674.1 mRNA downstream 167536 4491768 ~ 4568591 (+) False LOC110536527
XM_036934675.1 mRNA downstream 171066 4495298 ~ 4568591 (+) True LOC110536527
XM_036936609.1 mRNA downstream 259384 4583616 ~ 4586582 (+) True LOC118937435
XM_036934676.1 mRNA downstream 495513 4819745 ~ 4956185 (+) False eya1
XM_036934677.1 mRNA downstream 495513 4819745 ~ 4956185 (+) False eya1
TU1067343 other upstream 337381 3981851 ~ 3982198 (+) True G935977
TU1067342 other upstream 338428 3980771 ~ 3981151 (+) True G935976
TU1067186 other upstream 769092 3550039 ~ 3550487 (+) True G935846
TU1065679 other upstream 2410499 1908660 ~ 1909080 (+) True G934640
TU1065592 other upstream 2492213 1826627 ~ 1827366 (+) True G934579
TU1068725 other downstream 695673 5019905 ~ 5021613 (+) False G937051
TU1068724 other downstream 695928 5020160 ~ 5028145 (+) True G937051
TU1068784 other downstream 819085 5143317 ~ 5144565 (+) True G937096
TU1068947 other downstream 1180472 5504704 ~ 5505329 (+) True G937237
TU1069683 other downstream 1797352 6121584 ~ 6122269 (+) False G937889

Expression Profile