RNA id: TU1067965


Basic Information

Item Value
RNA id TU1067965
length 324
lncRNA type inter_gene
GC content 0.42
exon number 1
gene id G936452
representative True

Chromosome Information

Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 4331465 ~ 4331788 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

cgtcaaaatctggggtgtgaactaggtttcttttcaagcgttgatcgacatggtaacggctctgtagtattggagaaaagtttaaaacaaactgaccctccgttacatcgtgacatgtcatgtcgtaacgtacagcataaagcaactatttcaaatcaaatttatttatatagcccttcgtacatcagctgatatctcaaagtgctgtacagaaacccagcctaaaaccccaaacagcaagcaatgcaggtgtagaagcacctgcaggtgtcttacaatctctctccaccaggtggagcacttctctcatcgtttagaaacaag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1067958 lncRNA upstream 7233 4319579 ~ 4324232 (+) False G936449
TU1067957 lncRNA upstream 7233 4321549 ~ 4324232 (+) False G936449
TU1067959 lncRNA upstream 7233 4323221 ~ 4324232 (+) True G936449
TU1067951 lncRNA upstream 26663 4304588 ~ 4304802 (+) True G936444
TU1067943 lncRNA upstream 51000 4280246 ~ 4280465 (+) True G936440
TU1067975 lncRNA downstream 11115 4342903 ~ 4344147 (+) False G936459
TU1067974 lncRNA downstream 11733 4343521 ~ 4344147 (+) True G936459
TU1067987 lncRNA downstream 35164 4366952 ~ 4401418 (+) True G936470
TU1068002 lncRNA downstream 52602 4384390 ~ 4385052 (+) False G936477
TU1068003 lncRNA downstream 52602 4384390 ~ 4385052 (+) True G936477
XM_036936631.1 mRNA upstream 214062 4109412 ~ 4117403 (+) True LOC118937460
XR_005034819.1 mRNA upstream 307773 4023597 ~ 4023692 (+) True LOC118937480
XR_005034818.1 mRNA upstream 310133 4021240 ~ 4021332 (+) True LOC118937479
XR_005034817.1 mRNA upstream 310890 4020480 ~ 4020575 (+) True LOC118937478
XR_005034816.1 mRNA upstream 311557 4019814 ~ 4019908 (+) True LOC118937477
XM_036934674.1 mRNA downstream 159980 4491768 ~ 4568591 (+) False LOC110536527
XM_036934675.1 mRNA downstream 163510 4495298 ~ 4568591 (+) True LOC110536527
XM_036936609.1 mRNA downstream 251828 4583616 ~ 4586582 (+) True LOC118937435
XM_036934676.1 mRNA downstream 487957 4819745 ~ 4956185 (+) False eya1
XM_036934677.1 mRNA downstream 487957 4819745 ~ 4956185 (+) False eya1
TU1067343 other upstream 349267 3981851 ~ 3982198 (+) True G935977
TU1067342 other upstream 350314 3980771 ~ 3981151 (+) True G935976
TU1067186 other upstream 780978 3550039 ~ 3550487 (+) True G935846
TU1065679 other upstream 2422385 1908660 ~ 1909080 (+) True G934640
TU1065592 other upstream 2504099 1826627 ~ 1827366 (+) True G934579
TU1068725 other downstream 688117 5019905 ~ 5021613 (+) False G937051
TU1068724 other downstream 688372 5020160 ~ 5028145 (+) True G937051
TU1068784 other downstream 811529 5143317 ~ 5144565 (+) True G937096
TU1068947 other downstream 1172916 5504704 ~ 5505329 (+) True G937237
TU1069683 other downstream 1789796 6121584 ~ 6122269 (+) False G937889

Expression Profile