RNA id: TU1068003


Basic Information

Item Value
RNA id TU1068003
length 398
lncRNA type inter_gene
GC content 0.50
exon number 4
gene id G936477
representative True

Chromosome Information

Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 4384390 ~ 4385052 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gggttggtttgggttgGTGAATTGAGTCTCAGAACCAgctggctgagtgctgtcctgaggctctatggggttggtttgggttggtgaattGAGTCTCAGAACCAGgtggctgagtgttgtcctgaggctctatggggttggtttgggttagtgaactgagcctcagaaccaggtggctgagtgttgtcctgaggctctatggggttggtttgggttggtgaattGAGTCTCAGAACCAGgtggctgagtgttgtcctgaggctctatggggttgttTTGGGTTGGTGAattgagcctcagaaccagctggctgaggggactcttctcttgtttcatctcttgacattgtagagctgtgtgatggaatgttttgaggtcacttgtttttagatggttgt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1067975 lncRNA upstream 40243 4342903 ~ 4344147 (+) False G936459
TU1067974 lncRNA upstream 40243 4343521 ~ 4344147 (+) True G936459
TU1067965 lncRNA upstream 52602 4331465 ~ 4331788 (+) True G936452
TU1067957 lncRNA upstream 60158 4321549 ~ 4324232 (+) False G936449
TU1068193 lncRNA downstream 17594 4402646 ~ 4403851 (+) False G936613
TU1068194 lncRNA downstream 17594 4402646 ~ 4404224 (+) True G936613
TU1068195 lncRNA downstream 19351 4404403 ~ 4405069 (+) True G936614
TU1068199 lncRNA downstream 21528 4406580 ~ 4406825 (+) True G936618
TU1068200 lncRNA downstream 22020 4407072 ~ 4407361 (+) True G936619
XM_036936631.1 mRNA upstream 266987 4109412 ~ 4117403 (+) True LOC118937460
XR_005034819.1 mRNA upstream 360698 4023597 ~ 4023692 (+) True LOC118937480
XR_005034818.1 mRNA upstream 363058 4021240 ~ 4021332 (+) True LOC118937479
XR_005034817.1 mRNA upstream 363815 4020480 ~ 4020575 (+) True LOC118937478
XR_005034816.1 mRNA upstream 364482 4019814 ~ 4019908 (+) True LOC118937477
XM_036934674.1 mRNA downstream 106716 4491768 ~ 4568591 (+) False LOC110536527
XM_036934675.1 mRNA downstream 110246 4495298 ~ 4568591 (+) True LOC110536527
XM_036936609.1 mRNA downstream 198564 4583616 ~ 4586582 (+) True LOC118937435
XM_036934676.1 mRNA downstream 434693 4819745 ~ 4956185 (+) False eya1
XM_036934677.1 mRNA downstream 434693 4819745 ~ 4956185 (+) False eya1
TU1067343 other upstream 402192 3981851 ~ 3982198 (+) True G935977
TU1067342 other upstream 403239 3980771 ~ 3981151 (+) True G935976
TU1067186 other upstream 833903 3550039 ~ 3550487 (+) True G935846
TU1065679 other upstream 2475310 1908660 ~ 1909080 (+) True G934640
TU1065592 other upstream 2557024 1826627 ~ 1827366 (+) True G934579
TU1068725 other downstream 634853 5019905 ~ 5021613 (+) False G937051
TU1068724 other downstream 635108 5020160 ~ 5028145 (+) True G937051
TU1068784 other downstream 758265 5143317 ~ 5144565 (+) True G937096
TU1068947 other downstream 1119652 5504704 ~ 5505329 (+) True G937237
TU1069683 other downstream 1736532 6121584 ~ 6122269 (+) False G937889

Expression Profile