RNA id: TU1068559


Basic Information

Item Value
RNA id TU1068559
length 1551
lncRNA type intronic
GC content 0.40
exon number 6
gene id G936917
representative True

Chromosome Information

Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 4838840 ~ 4841960 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ctataaaacagactaatggttgagactagtggactataaaacagactaatggttgagactagtggactataaaacagactaatggactgtagaacagactaatggttgagactagtggactataaaacagactaatggttgagactagttgactatagaccagactaatggttgagactagtggactataaaacagactaatggttgagactagtggactaaaaaaagactaatggttgagactagtggactataaaacagactaatggttgagactagtggactatagaccagactaatggttgagactagtggactataaaacagactaatggttgagactagtggactgtAGTGGAGACTAGTGGACTGTAGAGGAGACTAGTGGACTGTAGgggagactagtggactataaaacagactaatggttgagactagtggactataaaacagactaatggttgaggCTAGTGGACTATAGAccagactaatggttgagactagtggactatagaccagactaatggactataaaacagactaatggttgagactagtggactatagaccagactaatggttgagactagtggactatagaggagactagtggactataaaacagactaatggttgagactagtggactataaaacagactaatggttgagactagtgtactataaaacagactaatggttgagactagtggactataaaacagactaatggttgagactagtggactatagaccagactaatggttgagactagtggactataatacagactaatggttgagactagtggactataaaacagactaacggttgagactagtggactataaaacagactaatggttgagactagtggactataaaacagactaatggttgagactagtggactatagacCAGACTAATGGATGAGACTAATGGACAGTAGtacagactaatggttgagactagtggactataaaacagactaatggttgagactagtggactataaaacagactaatggttgagactagtggactatagaccagactaatggttgagactaatggactgtagtacagactaatggttgagactagtggactataaaacagactaatggttgagactaaTGGACTATAGTCCAGACTAGTGGACTGTAGAACAGACTAGTGGACTGTAGACCAGACTAGTGGACTGTAGAccagactagtggactatagaccagactaatggactgtagaccagactagtggactatagaccagactagtggactatagaccagactaatggactatagaccagactaatggactgtagaccagactaatggactatagaccagactaatggactatagaccagactaatggactgtagaccagactaatggactgtagaccagactaatggactgtagaccagactaatggactgtagaccagactaatggactgtagacCAGACGAATGGACTAtagaccagactaatGGACTATAGACCAGACCAATGGACTGtagaccagactaatggactATAGACC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1068538 lncRNA upstream 28752 4809778 ~ 4810088 (+) True G936905
TU1068501 lncRNA upstream 46228 4790706 ~ 4792612 (+) True G936876
TU1068492 lncRNA upstream 62776 4773163 ~ 4776064 (+) True G936869
TU1068493 lncRNA upstream 65009 4773583 ~ 4773831 (+) True G936870
TU1068487 lncRNA upstream 71570 4766944 ~ 4767270 (+) True G936864
TU1068711 lncRNA downstream 162008 5003968 ~ 5004666 (+) True G937038
TU1068749 lncRNA downstream 239104 5081064 ~ 5085992 (+) True G937071
TU1068762 lncRNA downstream 296040 5138000 ~ 5187878 (+) False G937082
TU1068764 lncRNA downstream 297189 5139149 ~ 5187878 (+) False G937082
TU1068787 lncRNA downstream 306493 5148453 ~ 5153171 (+) True G937098
XM_036936609.1 mRNA upstream 252258 4583616 ~ 4586582 (+) True LOC118937435
XM_036934674.1 mRNA upstream 270249 4491768 ~ 4568591 (+) False LOC110536527
XM_036934675.1 mRNA upstream 270249 4495298 ~ 4568591 (+) True LOC110536527
XM_036936631.1 mRNA upstream 721437 4109412 ~ 4117403 (+) True LOC118937460
XR_005034819.1 mRNA upstream 815148 4023597 ~ 4023692 (+) True LOC118937480
XR_005034537.1 mRNA downstream 117084 4959044 ~ 4963664 (+) True LOC118937293
XM_036934610.1 mRNA downstream 326927 5168887 ~ 5184807 (+) False LOC100136147
XM_036934611.1 mRNA downstream 326930 5168890 ~ 5184807 (+) False LOC100136147
NM_001124437.1 mRNA downstream 327016 5168976 ~ 5184747 (+) True LOC100136147
XM_036934699.1 mRNA downstream 351221 5193181 ~ 5429446 (+) False LOC110536532
TU1067343 other upstream 856642 3981851 ~ 3982198 (+) True G935977
TU1067342 other upstream 857689 3980771 ~ 3981151 (+) True G935976
TU1067186 other upstream 1288353 3550039 ~ 3550487 (+) True G935846
TU1065679 other upstream 2929760 1908660 ~ 1909080 (+) True G934640
TU1065592 other upstream 3011474 1826627 ~ 1827366 (+) True G934579
TU1068725 other downstream 177945 5019905 ~ 5021613 (+) False G937051
TU1068724 other downstream 178200 5020160 ~ 5028145 (+) True G937051
TU1068784 other downstream 301357 5143317 ~ 5144565 (+) True G937096
TU1068947 other downstream 662744 5504704 ~ 5505329 (+) True G937237
TU1069683 other downstream 1279624 6121584 ~ 6122269 (+) False G937889

Expression Profile