RNA id: TU1068724


Basic Information

Item Value
RNA id TU1068724
length 1613
RNA type TUCP
GC content 0.43
exon number 6
gene id G937051
representative True

Chromosome Information

Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 5019905 ~ 5028145 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gtctaatacagggtcaactacaggtcaactacagggtctaatacagggtcaactacagggtctaatacagggtctaatacagggtctaatacagggtctaatacagggtcaactacagggtctaatacagggtctaatacagggtctaatacagggtcaactacagggtctaatacagggtctaataaagggtctaatacagggtctaatacagggtcaacaacagggtctaatacagggtcaactacagggtctaatacagggtcaactacagggtctaatacagggtcaactacagggtctaatacagggtctaatacagggtctaatacagggtctaatacagggtgtaatacagggtcaactacagggtctaatacagggtctaatacagggtcaactacagtgtctaatacagggtcaactacagggtcaactacagggtctaatacagggtcaactacagggtcaactacagggtctaatacagggtctaatacagggtcaactacagggtctaatacagggtctaatacagggtcaactacagggtctaatacagggtctaatacagggtctaatacagggtcaactacagggtctaatacagggtcaactacagggtctaatacagggtctaatacagggtcaactacagggtctaatacagggtcaactacagggtctaatacagggtctaatacagggtctaatacagggtctaatacagggtctaatacagggtcaactacagggtctaatacagggtctaatacagggtctaatacagggtataatacagggtcaactacagggtcaaatacagggtctaatacagggtcaactacagggtctaatacagggtctaatacaggatctaatacagggtctaatacagggtctaatacagggtcaactacagggtctaatacagggtcaactacagggtcaactacagggtctaatacagggtcaactacagggtcaactacagggtctaatacagggtataatacagggtctaatacagggtctaatgcagggtcaactacagggtctaatgcagggtcaactacagggtcaactacagggtcaactacagggtctaatacagggtctaatgcagggtcaactacagggtctaatacagggtctaatacagggtctaatacagggtctaatacagggtcaactacagggtctaatacaaggtctaatacagggtcaactacagggtcgactacagggtcaactacagggtcaactacagggtctcatacagggtctaatacagggtctaatacagggtctaatacagggtcaactaaAGAGTCAACTACATGGTctaatgtttttgctgtttgttctttgttatagagccaaaaagattggagaagtggtttacccagacatctccattttggatagataactctttgtgttgttgtttgttttgtgttttccaATTTTGTGGTTAGATTCTATGTATTTTTCAATTACGTTGAGcggatttctgacgtgctgttacTTCTTTTTCCATATTTCTgtgttgttttagtgattcaccatagtgtatttctgtgttgttttagtgattcaccatagtgtatttc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1068711 lncRNA upstream 15494 5003968 ~ 5004666 (+) True G937038
TU1068559 lncRNA upstream 178200 4838840 ~ 4841960 (+) True G936917
TU1068538 lncRNA upstream 210072 4809778 ~ 4810088 (+) True G936905
TU1068501 lncRNA upstream 227548 4790706 ~ 4792612 (+) True G936876
TU1068493 lncRNA upstream 246329 4773583 ~ 4773831 (+) True G936870
TU1068749 lncRNA downstream 52919 5081064 ~ 5085992 (+) True G937071
TU1068762 lncRNA downstream 109855 5138000 ~ 5187878 (+) False G937082
TU1068764 lncRNA downstream 111004 5139149 ~ 5187878 (+) False G937082
TU1068787 lncRNA downstream 120308 5148453 ~ 5153171 (+) True G937098
TU1068789 lncRNA downstream 121318 5149463 ~ 5152815 (+) True G937100
XR_005034537.1 mRNA upstream 56496 4959044 ~ 4963664 (+) True LOC118937293
XM_036934692.1 mRNA upstream 63975 4819745 ~ 4956185 (+) False eya1
XM_036934610.1 mRNA downstream 140742 5168887 ~ 5184807 (+) False LOC100136147
XM_036934611.1 mRNA downstream 140745 5168890 ~ 5184807 (+) False LOC100136147
NM_001124437.1 mRNA downstream 140831 5168976 ~ 5184747 (+) True LOC100136147
XM_036934699.1 mRNA downstream 165036 5193181 ~ 5429446 (+) False LOC110536532
XM_036934700.1 mRNA downstream 165036 5193181 ~ 5429446 (+) False LOC110536532
TU1067343 other upstream 1037962 3981851 ~ 3982198 (+) True G935977
TU1067342 other upstream 1039009 3980771 ~ 3981151 (+) True G935976
TU1067186 other upstream 1469673 3550039 ~ 3550487 (+) True G935846
TU1065679 other upstream 3111080 1908660 ~ 1909080 (+) True G934640
TU1065592 other upstream 3192794 1826627 ~ 1827366 (+) True G934579
TU1068784 other downstream 115172 5143317 ~ 5144565 (+) True G937096
TU1068947 other downstream 476559 5504704 ~ 5505329 (+) True G937237
TU1069683 other downstream 1093439 6121584 ~ 6122269 (+) False G937889
TU1070683 other downstream 1991006 7019151 ~ 7021424 (+) False G938723
TU1070682 other downstream 1992931 7021076 ~ 7021424 (+) True G938723

Expression Profile